PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004485928.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 214aa    MW: 23757.4 Da    PI: 4.9335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004485928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.86.1e-303593259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                    +D ++WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver++ dp+v+ +tY+++Hnh 
  XP_004485928.1 35 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkSCPARKQVERNHVDPTVLLVTYSSDHNHA 93
                    69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-302995IPR003657WRKY domain
SuperFamilySSF1182904.05E-253195IPR003657WRKY domain
SMARTSM007747.7E-333494IPR003657WRKY domain
PROSITE profilePS5081130.8823595IPR003657WRKY domain
PfamPF031064.4E-253692IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MERSSISSST KRRGIKKRVV EIPMKDVEGT NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC  60
SSSKSCPARK QVERNHVDPT VLLVTYSSDH NHAVPLPRNH RNNNNESAKS NKDSESEHEP  120
EPEERFTDLG EESLIAVADE LGGWLGEVEA IASPAVLECP IFSDQELSML GEEEESLFAD  180
LGELPECSAV FWRGRRSIAG EVSVGPLVEA NCSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-191795679Disease resistance protein RRS1
5w3x_D7e-191795679Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004485928.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004485928.11e-157probable WRKY transcription factor 65
SwissprotQ9LP562e-60WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A1S2X9Y41e-155A0A1S2X9Y4_CICAR; probable WRKY transcription factor 65
STRINGXP_004485928.11e-156(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.12e-56WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]