PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004485835.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 1785aa MW: 201345 Da PI: 5.4345

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004485835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.3e-18	48	103	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+ +r eL++klgL++rq ++WF+ rR k+kk XP_004485835.1 48 PKRQMKTPFQLETLEKAYALENYPSEVTRVELSEKLGLSDRQLQMWFCHRRLKDKK 103 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.0E-18	26	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.28E-17	33	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.698	44	104	IPR001356	Homeobox domain
SMART	SM00389	8.8E-18	46	108	IPR001356	Homeobox domain
Pfam	PF00046	9.1E-16	48	103	IPR001356	Homeobox domain
CDD	cd00086	1.08E-13	49	104	No hit	No description
SMART	SM00571	7.2E-21	577	636	IPR018501	DDT domain
PROSITE profile	PS50827	16.732	577	636	IPR018501	DDT domain
Pfam	PF02791	2.0E-16	579	633	IPR018501	DDT domain
Pfam	PF05066	2.4E-14	758	825	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.4E-9	968	1010	IPR028942	WHIM1 domain
Pfam	PF15613	4.8E-13	1149	1221	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1785 aa Download sequence Send to blast
MDVEAENNTQ KGDDGGENSN ENNNNNNNMN NNGSNSKIMS SSEGQSKPKR QMKTPFQLET 60 LEKAYALENY PSEVTRVELS EKLGLSDRQL QMWFCHRRLK DKKELPPKKP RKAPPLPDSP 120 TDELNPKLAI EPVNEYGSGS GSGSSPIARP ELRSVVPTRT YYESPQTIIE LRAIACVEAQ 180 LGEPLREDGP ILGTEFDPLP PDAFGAPLAV AEQQKRPSLP YDSKIYERHE VRTNKAVART 240 FPEYTFVPSQ SSIRSDTFGQ LSQPHLYDSM EGPTRTPPFP IGNEHLPRVH ASQNHSSRAR 300 LLSQQDKPVI PYTSPPHLLS QQDKQLIPYP SPPRDNDVVP KREPHTNIAN TSMNTQFSDH 360 LIVGQENSLA LGLPGGQVLH NDAVLRVEKK RKSDDARVAK EVEAYEIRMK KELEKQDILR 420 KKNEERMKKE MERQDRERRK EEERLMRERQ REEERLKREH RRELERREKY LIKEHLRAEK 480 RKQKEEIRKE REAERRKAAL EKANARRIAK ESMELIEDEQ LELMELAAAS KGLSSIIHID 540 LDTLQNLESF RDSLCIFPPK SVKLRKPFAI QPWINSEQNV GNLLMVWRFL ITFADVLELW 600 PFTLDEFVQA FHDYDTRLLG EIHVALLKVV IKDIEDVART PSGLGLNQNG AANPAGGHPE 660 IVEGAYTWGF DIRNWQKNLN QLTWPEILRQ LALSAGFGPQ LKKRSVTWSI ANDKDEGRSC 720 EDVISTLRNG SXAVSAVAKM REKGLLAPRK SRHRLTPGTV KFAAFHVLSL EGSKGLNVLD 780 LAEKIQKSGL RDLTTSKTPE ASISVALTRD AKLFERIAPS TYRVRTAFRK DPADAVSILS 840 EARKKIQIFE NGFLAGEDAD DVEREEESES DGVDEDPEDD DLMNPSGGNQ VSEQYDDMNI 900 CSVNVKENLG HDVDLILNEL DTDLPCFPEN GSKDADCPSS VTRQPAACEN LNTGNLDDDN 960 MEIDETKSGE SWVQGLTEGE YSDLSVEERL NALVALVGVA NEGNSIRIVL EDRLEAANAL 1020 KKQMWAEAQI DKVRLKDDYI SKLDFPSLTG NKFETQDTYL AVEGNQSPML NMNINNIKNE 1080 ASPSTAENQK EAPGAQNLLI ERPSAVQDFC TGTGPDNFQA QVPAQYSKRS RSQLKSYISH 1140 IAEEMYVYRS LPLGQDRRRN RYWQFVASAS SNDPGSGRIF VEHHDGSWML IDSEEAFDIL 1200 LTSLDSRGIR ESHLRLMLQK IEKSFKENVR KNTQYAKVGS IGEVSIKTEA KETYPKPEHH 1260 SRSDSPSSTL HDLHPDASET SSSFKIEIGK SENEKKAALK RYQDFQKWMW KECYSSSILC 1320 AMKFGIKRCK PQVDMCEFCL NPYSVEDSHC SSCHQTFPSN NGFNFSKHAF QCGGKLSKDI 1380 CIMEHSLPLR TRLLKVLLSY MEASVLSEAF GTIWTTDFRK RWGVKLSKSS SVEELLQMLT 1440 LFERALRRDF LSSNFSTTDE LLGSSSLSES AAHVFPDPES IALLPWVPQT TAALSLRLFE 1500 FDSSISYVKL ERIEPCEEKE EREYIRLPSR YTPFKSNREV EPAALDHDGF LKVKSSANKI 1560 VRSGNKRGRG ASDHGRGKKL AKRMYNSKRD TGRRNVKVTE SLSQKLKQQG RGTQGQGGGR 1620 GRRTVRKRRV EKRAVEDLLL GHAAASHSPK SDREPLRSLD EEWDVEKASP MTPVHIGVAE 1680 NSNSAEEVES DDNGQAVEYD HGNWEIGYNG VSPNNWNRDL VGMSDDDVDT FEDDNDNDND 1740 NNIGVGIEDN EEEDSDDDVM SEGSDGMANR IVNVGGGSDS EDSSD

Sequence ? help Back to Top

Protein Sequence Length: 1785 aa Download sequence Send to blast

MDVEAENNTQ KGDDGGENSN ENNNNNNNMN NNGSNSKIMS SSEGQSKPKR QMKTPFQLET  60
LEKAYALENY PSEVTRVELS EKLGLSDRQL QMWFCHRRLK DKKELPPKKP RKAPPLPDSP  120
TDELNPKLAI EPVNEYGSGS GSGSSPIARP ELRSVVPTRT YYESPQTIIE LRAIACVEAQ  180
LGEPLREDGP ILGTEFDPLP PDAFGAPLAV AEQQKRPSLP YDSKIYERHE VRTNKAVART  240
FPEYTFVPSQ SSIRSDTFGQ LSQPHLYDSM EGPTRTPPFP IGNEHLPRVH ASQNHSSRAR  300
LLSQQDKPVI PYTSPPHLLS QQDKQLIPYP SPPRDNDVVP KREPHTNIAN TSMNTQFSDH  360
LIVGQENSLA LGLPGGQVLH NDAVLRVEKK RKSDDARVAK EVEAYEIRMK KELEKQDILR  420
KKNEERMKKE MERQDRERRK EEERLMRERQ REEERLKREH RRELERREKY LIKEHLRAEK  480
RKQKEEIRKE REAERRKAAL EKANARRIAK ESMELIEDEQ LELMELAAAS KGLSSIIHID  540
LDTLQNLESF RDSLCIFPPK SVKLRKPFAI QPWINSEQNV GNLLMVWRFL ITFADVLELW  600
PFTLDEFVQA FHDYDTRLLG EIHVALLKVV IKDIEDVART PSGLGLNQNG AANPAGGHPE  660
IVEGAYTWGF DIRNWQKNLN QLTWPEILRQ LALSAGFGPQ LKKRSVTWSI ANDKDEGRSC  720
EDVISTLRNG SXAVSAVAKM REKGLLAPRK SRHRLTPGTV KFAAFHVLSL EGSKGLNVLD  780
LAEKIQKSGL RDLTTSKTPE ASISVALTRD AKLFERIAPS TYRVRTAFRK DPADAVSILS  840
EARKKIQIFE NGFLAGEDAD DVEREEESES DGVDEDPEDD DLMNPSGGNQ VSEQYDDMNI  900
CSVNVKENLG HDVDLILNEL DTDLPCFPEN GSKDADCPSS VTRQPAACEN LNTGNLDDDN  960
MEIDETKSGE SWVQGLTEGE YSDLSVEERL NALVALVGVA NEGNSIRIVL EDRLEAANAL  1020
KKQMWAEAQI DKVRLKDDYI SKLDFPSLTG NKFETQDTYL AVEGNQSPML NMNINNIKNE  1080
ASPSTAENQK EAPGAQNLLI ERPSAVQDFC TGTGPDNFQA QVPAQYSKRS RSQLKSYISH  1140
IAEEMYVYRS LPLGQDRRRN RYWQFVASAS SNDPGSGRIF VEHHDGSWML IDSEEAFDIL  1200
LTSLDSRGIR ESHLRLMLQK IEKSFKENVR KNTQYAKVGS IGEVSIKTEA KETYPKPEHH  1260
SRSDSPSSTL HDLHPDASET SSSFKIEIGK SENEKKAALK RYQDFQKWMW KECYSSSILC  1320
AMKFGIKRCK PQVDMCEFCL NPYSVEDSHC SSCHQTFPSN NGFNFSKHAF QCGGKLSKDI  1380
CIMEHSLPLR TRLLKVLLSY MEASVLSEAF GTIWTTDFRK RWGVKLSKSS SVEELLQMLT  1440
LFERALRRDF LSSNFSTTDE LLGSSSLSES AAHVFPDPES IALLPWVPQT TAALSLRLFE  1500
FDSSISYVKL ERIEPCEEKE EREYIRLPSR YTPFKSNREV EPAALDHDGF LKVKSSANKI  1560
VRSGNKRGRG ASDHGRGKKL AKRMYNSKRD TGRRNVKVTE SLSQKLKQQG RGTQGQGGGR  1620
GRRTVRKRRV EKRAVEDLLL GHAAASHSPK SDREPLRSLD EEWDVEKASP MTPVHIGVAE  1680
NSNSAEEVES DDNGQAVEYD HGNWEIGYNG VSPNNWNRDL VGMSDDDVDT FEDDNDNDND  1740
NNIGVGIEDN EEEDSDDDVM SEGSDGMANR IVNVGGGSDS EDSSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	96	103	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004485835.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC158497	0.0	AC158497.2 Medicago truncatula chromosome 2 clone mth2-48e18, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004485835.1	0.0	homeobox-DDT domain protein RLT1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A1S2XCH6	0.0	A0A1S2XCH6_CICAR; homeobox-DDT domain protein RLT1
STRING	XP_004485835.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator