PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004485768.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Dof | ||||||||
Protein Properties | Length: 280aa MW: 31426.7 Da PI: 8.5677 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 111.6 | 3.5e-35 | 45 | 103 | 2 | 60 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +++a+kcprCdstntkfCyynny+ sqPr++C+aC+r+WtkGG+lrnvPvGggr++++ XP_004485768.1 45 QSEAVKCPRCDSTNTKFCYYNNYNKSQPRHYCRACKRHWTKGGTLRNVPVGGGRKNKRL 103 67899***********************************************9776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-23 | 46 | 102 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-31 | 48 | 101 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 26.99 | 49 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 51 | 87 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGLSSKQVSS NRDIDWNQTL LQDQNLELPK SLPMKKQQQQ QQTQQSEAVK CPRCDSTNTK 60 FCYYNNYNKS QPRHYCRACK RHWTKGGTLR NVPVGGGRKN KRLKKSTPPT SINTSTNTTI 120 NTTTKTSIST TPTTSNTNMD ADFNTNMTKI QTSHQKQNLS EFGIGNGMFL STSMPFTQNQ 180 SFLFPFSNST SFDTNTCAAV STSLKSSNNV YNYGEEFKTM EDSNINSVIP STSGGNITQP 240 WEMPATSNGM EMSNYWSWED IDSLVSTDLN VPWDDSDIKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004485768.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485768.1 | 0.0 | dof zinc finger protein DOF4.7-like | ||||
Refseq | XP_027187277.1 | 0.0 | dof zinc finger protein DOF4.7-like | ||||
TrEMBL | A0A1S2X9Q9 | 0.0 | A0A1S2X9Q9_CICAR; dof zinc finger protein DOF4.7-like | ||||
STRING | XP_004485768.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28310.2 | 1e-28 | Dof family protein |