PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004485711.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | B3 | ||||||||
Protein Properties | Length: 889aa MW: 98181.2 Da PI: 7.4242 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58 | 1.7e-18 | 342 | 441 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+k+l+ sd+++ grlvlpkk+ae++ ++++e+ l++ d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + e++ XP_004485711.1 342 FQKTLSASDAGRIGRLVLPKKCAETYfpPISQPEGLPLKILDAKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRLE-PEGR 434 99**************************555566778***************9989999999***9.********************766.6666 PP .EEEEE- CS B3 92 lvvkvfr 98 lv+++++ XP_004485711.1 435 LVMGFRK 441 6666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-20 | 339 | 445 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.5E-31 | 339 | 449 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.32E-22 | 340 | 441 | No hit | No description |
SMART | SM01019 | 3.0E-21 | 342 | 442 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.152 | 342 | 443 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-15 | 342 | 441 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.708 | 570 | 620 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.7E-11 | 575 | 617 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 889 aa Download sequence Send to blast |
MASAPSSSPS SSSSSKLCFN SDCKDFKSER PKKGWRLRTG DLAELCDRCG SAFEEGRFCD 60 LFHANASGWR NCETCRKRIH CGCIVSSHTF VLLDPGGIEC FTCARKNIIL PSNLPWSQSF 120 SLQNRLSERL RDLSAKNWSQ LAGSGPVPWK QAPSLFNPAS SSDLPPDGHS LVELSNNFDK 180 IYGNERLPAS SLEKKNEDLS GIPANWNVKL GSREMVLMNG MRNEDKSGPC FNMCQQPHSL 240 KEDSSSQPFG LSVTYSSPNE RNGQIGVTGI HPQPIPPHPG KQYSGTMHLA PDSSGEAHVR 300 NGRPRADARG RSQLLPRYWP RCTDLELQQI SIDSNSVITP LFQKTLSASD AGRIGRLVLP 360 KKCAETYFPP ISQPEGLPLK ILDAKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA 420 GDTVTFSRLE PEGRLVMGFR KSTSTMPSDQ DNETNKTGNG FSAHGEVELV DPSSWSKVDK 480 SGYIAKEALG SKSLISRKRK NNILGSKSKR LKLDNEDIIE LKITWQEAQG LLRPPPNHVP 540 SIVVIEGFEF EEYEDAPVLG KPTIFTSDNM GERIQWAQCE DCLKWRKLPA CALLPSKWTC 600 SDNLWDPERS SCSAAQELTA EQLENLLPPC NSAVSKKMKA AKLDPDNADA LEGLDTLANL 660 AILGEGEALP TSSQATTKHP RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CLTVKRRFRT 720 LMLRREKKQS EREAETTRKK QQQQHSQQLP SSEILLDDDS LHNSNTGDSS PNQNKEGNDG 780 SDDDPHRIKS SVSPFKGQID LNIQPEREEE LSPGSDSGGV MKLLHDATEM YIKQQQNVLN 840 SSTGDSSGSQ SQQVADGVRE EKLSNGVITH GSSSHNANKE HDQSLSMNV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 9e-61 | 320 | 445 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 9e-61 | 320 | 445 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 9e-61 | 320 | 445 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 9e-61 | 320 | 445 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 9e-61 | 320 | 445 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 9e-61 | 320 | 445 | 1 | 126 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 8e-61 | 320 | 445 | 2 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 497 | 511 | KRKNNILGSKSKRLK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004485711.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485711.1 | 0.0 | B3 domain-containing protein Os07g0563300-like | ||||
Refseq | XP_027185993.1 | 0.0 | B3 domain-containing protein Os07g0563300-like | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A1S2X9M8 | 0.0 | A0A1S2X9M8_CICAR; B3 domain-containing protein Os07g0563300-like | ||||
STRING | XP_004485711.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7738 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32010.1 | 1e-161 | HSI2-like 1 |