PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00032396-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 546aa    MW: 60323.3 Da    PI: 6.7576
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00032396-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.65.6e-12234290155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  WALNUT_00032396-RA 234 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 290
                         78*******************433.44555535555.779999**************98 PP
2AP248.22.7e-15333384155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  WALNUT_00032396-RA 333 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 384
                         78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-15234300IPR016177DNA-binding domain
CDDcd000181.27E-18234300No hitNo description
PfamPF008474.6E-9234290IPR001471AP2/ERF domain
PROSITE profilePS5103217.332235298IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-12235299IPR001471AP2/ERF domain
SMARTSM003804.8E-23235304IPR001471AP2/ERF domain
PRINTSPR003679.8E-7236247IPR001471AP2/ERF domain
CDDcd000184.32E-24333394No hitNo description
PfamPF008475.5E-10333384IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18333394IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-18334393IPR001471AP2/ERF domain
SMARTSM003806.7E-34334398IPR001471AP2/ERF domain
PROSITE profilePS5103219.006334392IPR001471AP2/ERF domain
PRINTSPR003679.8E-7374394IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSNWLGFSLS PHLRIDEGFG RETQDHGGFP AHLSVMPLRS DGSLCAADPF RRSSGADDWR  60
FENSMGAANP NEEGPKLEDF LGCCYSSSPP DETKVYCQTR EDHDQNNISK INVNIAPSFN  120
TNGEIEPGEN LSNSSSLLHP AYPYNENPQT LLTGNGMYKS WLGQTLFSDG KSFAEANGCS  180
FQSLSLAMSP SAQNGLDAIS PLQVTDSRKR PVAKTLAREP VPRKSIDTFG QRTSQYRGVT  240
RHRWTGRYEA HLWDNSCRKE GQTRKGRQGG YDKEEKAARA YDLAALKYWG PTTHINFPLS  300
TYEKELEEMK NMTRQEFVAN LRRKSSGFSR GASVYRGVTR HHQHGRWQAR IGRVAGNKDL  360
YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDMSRYDVKR ICSSSTLIAG DLAKRSPKDS  420
TPAALEDLIN SRASSTSPPQ PLLTITSNEP SDDLGDMLWT SNNNEEHLLE QHHHENTNTN  480
STDATFVASS SRNSSNPPSP ARCSFGTSNS DFGIGASDYS HVYFSLQGPK YEMGNSGGNE  540
HGMPMG
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018832018.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-142AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A2I4FK520.0A0A2I4FK52_JUGRE; AP2-like ethylene-responsive transcription factor AIL1
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-139AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]