PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

M-type_MADS

Protein Properties

Length: 269aa MW: 31000.5 Da PI: 9.0683

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00032286-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	51.2	1.7e-16	11	50	3	42
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r+ tf kR++g++KK +ELS+LC+++ + ii+ + WALNUT_00032286-RA 11 ITNDSARKATFKKRKKGLMKKMSELSTLCGIQTCAIIYCP 50 89***********************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.83E-21	1	84	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	16.47	1	48	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.4E-22	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00266	9.17E-20	2	85	No hit	No description
PRINTS	PR00404	5.6E-8	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.3E-17	11	50	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.6E-8	23	38	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MTRKKVKLAY ITNDSARKAT FKKRKKGLMK KMSELSTLCG IQTCAIIYCP YDSQPEVWPS 60 AMGVQRAIVR FKKMPEAEQS RKMVNQDIFL RQRISKAEEQ LKKQQRENRE KEMTQVMYRS 120 LVGDQGLQNL SVVDLKDLGW LVEKNIEEIE EKIKSLQAHQ MPPPQVVTVT SSHMISSTHD 180 LEKNDQAAKN TTDTAMDPTV QNQQWLTELL KPNDQNVGFG RNEDMMEPQN HQWLMDLLKS 240 NENVGFGKNE DMLPYGFNGN GLWSSFPFP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2	24	RKKVKLAYITNDSARKATFKKRK
2	21	25	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269\|PubMed:16798889, ECO:0000305\|PubMed:26462908}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018845153.1	0.0	PREDICTED: agamous-like MADS-box protein AGL80
Refseq	XP_018855303.1	0.0	PREDICTED: agamous-like MADS-box protein AGL80
Swissprot	Q9FJK3	1e-56	AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBL	A0A2I4HGM7	0.0	A0A2I4HGM7_JUGRE; agamous-like MADS-box protein AGL80
STRING	XP_010058573.1	6e-80	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF452	33	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	9e-56	AGAMOUS-like 80

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]