PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00031862-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18933.7 Da PI: 10.2497 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.3e-20 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd + r +r +lg+f+taeeAa a+++a+ +l+g WALNUT_00031862-RA 30 HFRGVRKRP-WGRFAAEIRDpW-----RkTRKWLGTFDTAEEAALAYDEAAISLRG 79 69*******.**********88.....45************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-29 | 30 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 30 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.812 | 30 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-31 | 30 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.88E-29 | 30 | 86 | No hit | No description |
PRINTS | PR00367 | 4.9E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MSIDALHTPR DSLAVSGTQS QSTGKRREVH FRGVRKRPWG RFAAEIRDPW RKTRKWLGTF 60 DTAEEAALAY DEAAISLRGI KARTNFGLRG LVITPPVLSV GAGACNYFGW MPKQECFSGA 120 GSPPPVRSEY KAYNMENVDV MVVSEQDKEK KNKTKQPFLF DLNLPAPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 30 | 89 | 5 | 65 | ATERF1 |
3gcc_A | 6e-21 | 30 | 89 | 5 | 65 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018857885.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor 12-like | ||||
TrEMBL | A0A2I4HP00 | 1e-123 | A0A2I4HP00_JUGRE; ethylene-responsive transcription factor 12-like | ||||
STRING | XP_008235314.1 | 4e-58 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-24 | ERF domain protein 12 |