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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00031675-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 226aa MW: 25652.6 Da PI: 5.7078 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60 | 3.9e-19 | 19 | 70 | 5 | 56 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le +Fe ++ p a+ +++LA++lgL rqV +WFqNrRa+ k WALNUT_00031675-RA 19 RRFNEEQTKSLEVMFEAESRPEAQVKQQLANELGLRPRQVAIWFQNRRARLK 70 68************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 105.1 | 5.6e-34 | 18 | 108 | 3 | 93 |
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+++eq k+LE +Fe+e++ e + K++la+eLgl+prqva+WFqnrRAR kt+q+E++y +Lk++yd+l+++ e+L++e+++L +l++ WALNUT_00031675-RA 18 MRRFNEEQTKSLEVMFEAESRPEAQVKQQLANELGLRPRQVAIWFQNRRARLKTRQIEREYCMLKASYDNLASNFESLKRENHQLLIQLQK 108 69***********************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.33E-17 | 8 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.912 | 12 | 72 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-16 | 14 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.73E-14 | 16 | 73 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-17 | 19 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.8E-16 | 19 | 70 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 2.4E-5 | 43 | 52 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 47 | 70 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.4E-5 | 52 | 68 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 2.3E-16 | 73 | 113 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MPESELHNLI CSRKNKNMRR FNEEQTKSLE VMFEAESRPE AQVKQQLANE LGLRPRQVAI 60 WFQNRRARLK TRQIEREYCM LKASYDNLAS NFESLKRENH QLLIQLQKLK NLLGKQHGNE 120 KGSSSAGESE KGDPIFEAKD KPSMSILPEG DDQKTNMLPG AGDTNCGNAQ CSEEETGILK 180 TAQPIIDHGS QTSSDDWCNC FPDDSSGNSQ WWELWSSSIA HPLQLT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018831909.1 | 1e-169 | PREDICTED: homeobox-leucine zipper protein ATHB-12-like | ||||
TrEMBL | A0A2I4FJT9 | 1e-167 | A0A2I4FJT9_JUGRE; homeobox-leucine zipper protein ATHB-12-like | ||||
STRING | EOY23889 | 5e-57 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16057 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.2 | 3e-32 | homeobox 7 |