![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00030708-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 25606.5 Da PI: 9.0853 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.7 | 9.2e-21 | 20 | 69 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp++ + r++lg+f+taeeAa+a++aa+ +++g WALNUT_00030708-RA 20 HFRGVRKRP-WGRYAAEIRDPCK---KSRVWLGTFDTAEEAARAYDAAAIEFRG 69 69*******.**********854...5************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.7E-40 | 20 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-32 | 20 | 78 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.026 | 20 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-14 | 20 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.63E-22 | 20 | 78 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.33E-19 | 20 | 77 | No hit | No description |
PRINTS | PR00367 | 4.8E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009864 | Biological Process | induced systemic resistance, jasmonic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016604 | Cellular Component | nuclear body | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 236 aa Download sequence Send to blast |
MAPRAKSAVA KGNSNDKEVH FRGVRKRPWG RYAAEIRDPC KKSRVWLGTF DTAEEAARAY 60 DAAAIEFRGA KAKTNFPLVS EDVDNKKNSH SNNQSPSQSS TVESSSREPA LMVDSSPLDL 120 NLAHGHGGGS GPANLIFPFQ QHHRQAPAVQ VFSGGIPAAN HMIFFDAIFR AGMAQGQPYQ 180 RLSFDRAPVA SDIHAAAFAH GVQSDSDSSS IVDLNHQDLK PRRVLDLNFP PPPEVA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-22 | 17 | 78 | 2 | 64 | ATERF1 |
3gcc_A | 3e-22 | 17 | 78 | 2 | 64 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00358 | DAP | Transfer from AT3G15210 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811611.1 | 1e-174 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_018853397.1 | 1e-174 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Refseq | XP_018853500.1 | 1e-174 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A2I4DWT6 | 1e-172 | A0A2I4DWT6_JUGRE; ethylene-responsive transcription factor 4-like | ||||
STRING | VIT_10s0003g00140.t01 | 4e-78 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-26 | erf domain protein 9 |