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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00030648-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | WRKY | ||||||||
Protein Properties | Length: 305aa MW: 33873.1 Da PI: 6.2421 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.6 | 4.7e-32 | 165 | 222 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt ++C+vkk+vers+ed ++v++tYeg+H h+ WALNUT_00030648-RA 165 EDGYRWRKYGQKAVKNSPFPRSYYRCTNSRCTVKKRVERSSEDRTIVITTYEGQHCHH 222 8******************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-33 | 149 | 223 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.83E-27 | 156 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.207 | 159 | 224 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-36 | 164 | 223 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.2E-25 | 165 | 222 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MDEGDKSDPG PEFTSNSSWP LGPDPDSVYF FANDRESSIL GEFGWNFQPD DPDRAGLHDG 60 SDLTGSFGFQ DHDQDHDHSN KSSDCALQSS DPALPVRSDS KVRGDLTASS NPSVSSSSSE 120 DPPEKSTGSG GKPPEIPNKV RKKGQKRIRQ PRFAFMTKSE VDQLEDGYRW RKYGQKAVKN 180 SPFPRSYYRC TNSRCTVKKR VERSSEDRTI VITTYEGQHC HHTVGFPRGG VNISHETFTG 240 QLAPPGSQFY YPAVQLPQQS PSFRMIQSQQ IPAGESHSMP EPSTPQFPTD EGLLGDMVPP 300 NMRNR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-24 | 154 | 221 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 5e-24 | 154 | 221 | 7 | 74 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00067 | PBM | Transfer from AT1G69310 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808597.1 | 0.0 | PREDICTED: probable WRKY transcription factor 57 | ||||
Swissprot | Q9C983 | 5e-75 | WRK57_ARATH; Probable WRKY transcription factor 57 | ||||
TrEMBL | A0A1S5QHW5 | 0.0 | A0A1S5QHW5_JUGRE; WRKY transcription factor 57 | ||||
STRING | POPTR_0010s16760.1 | 1e-123 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10814 | 31 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69310.2 | 2e-68 | WRKY DNA-binding protein 57 |
Publications ? help Back to Top | |||
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