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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00030054-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 291aa MW: 32755.8 Da PI: 6.5359 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88 | 5.3e-28 | 43 | 93 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g+lKKAeELSvLCdaeva+iifs tgkl+e++s WALNUT_00030054-RA 43 KKIDNVTARQVTFSKRRRGLLKKAEELSVLCDAEVALIIFSATGKLFEFCS 93 68***********************************************96 PP | |||||||
2 | K-box | 44.8 | 5.2e-16 | 121 | 204 | 15 | 98 |
K-box 15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + ++++ kL ke+ +++R+ Ge+Le L+l+eLq+Le+ Le +l+++ ++K++ +l+++++l +k +l een +Lrkk+ WALNUT_00030054-RA 121 QLENNNYIKLSKEMADKTHQLRQTRGEELEGLNLEELQKLEKMLEAGLTRVLETKEDRFLTEVNTLERKGAQLMEENSQLRKKV 204 5567889999999999999***************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.081 | 35 | 95 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-38 | 35 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.67E-41 | 36 | 112 | No hit | No description |
SuperFamily | SSF55455 | 1.83E-31 | 37 | 108 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 37 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-27 | 37 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-24 | 44 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-27 | 57 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-27 | 72 | 93 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.823 | 120 | 210 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.5E-15 | 123 | 204 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGRSVTAALL GLLLNLEKFC RNRTLSVTCY PILGMAREKI KIKKIDNVTA RQVTFSKRRR 60 GLLKKAEELS VLCDAEVALI IFSATGKLFE FCSSSMKDVL ERYNLHSNGL KQMDQPCLEL 120 QLENNNYIKL SKEMADKTHQ LRQTRGEELE GLNLEELQKL EKMLEAGLTR VLETKEDRFL 180 TEVNTLERKG AQLMEENSQL RKKVRIYNLC CIFFPENCLN KLADDEIFGL QMMMILSKGK 240 RAAVVESDTV VQEEGLSSES VTNVSSSGSG PPSLEDDSSD TSLKLGLPFS T |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-19 | 35 | 103 | 1 | 69 | MEF2C |
5f28_B | 3e-19 | 35 | 103 | 1 | 69 | MEF2C |
5f28_C | 3e-19 | 35 | 103 | 1 | 69 | MEF2C |
5f28_D | 3e-19 | 35 | 103 | 1 | 69 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor that inhibit floral transition in the autonomous flowering pathway, independent of photoperiod and temperature. Acts in a dosage-dependent manner. Together with AGL24 and AP1, controls the identity of the floral meristem and regulates expression of class B, C and E genes. Promotes EFM expression to suppress flowering (PubMed:25132385). {ECO:0000269|PubMed:16679456, ECO:0000269|PubMed:18694458, ECO:0000269|PubMed:19656343, ECO:0000269|PubMed:25132385}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the floral homeotic genes AP1 and SEP3 in emerging floral meristems. Up-regulated by HUA2. {ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17428825, ECO:0000269|PubMed:18694458}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ546348 | 1e-166 | KJ546348.1 Carya cathayensis SVP-like MADS-box protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018852859.1 | 1e-137 | PREDICTED: MADS-box protein SVP-like | ||||
Refseq | XP_018852860.1 | 1e-137 | PREDICTED: MADS-box protein SVP-like | ||||
Refseq | XP_018852861.1 | 1e-137 | PREDICTED: MADS-box protein SVP-like | ||||
Refseq | XP_018852862.1 | 1e-137 | PREDICTED: MADS-box protein SVP-like | ||||
Refseq | XP_018852863.1 | 1e-137 | PREDICTED: MADS-box protein SVP-like | ||||
Swissprot | Q9FVC1 | 1e-93 | SVP_ARATH; MADS-box protein SVP | ||||
TrEMBL | A0A2I4H9N8 | 1e-136 | A0A2I4H9N8_JUGRE; MADS-box protein SVP-like | ||||
STRING | EOY15444 | 1e-114 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF890 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 4e-72 | MIKC_MADS family protein |