PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00029066-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HD-ZIP

Protein Properties

Length: 349aa MW: 38926.4 Da PI: 5.8403

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00029066-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.7	7.5e-22	99	154	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k WALNUT_00029066-RA 99 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 154 7999************************************************9877 PP
2	START	33.8	7.6e-12	269	345	2	67
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCC CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveelld 67 + +ea++el+++a+a+ep+W +s+ e++n+de++++++ +++ +s+ea+r++gvv+ +l++l++ + d WALNUT_00029066-RA 269 IVNEAMEELITMATAGEPLWIRSVetgrEILNYDEYVKELSAKNSsnnvrpkRSIEASRETGVVFVDLPRLLQCFTD 345 6789**********************************998889*********************99987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-24	84	150	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.72E-21	87	157	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.22	96	156	IPR001356	Homeobox domain
SMART	SM00389	8.3E-19	98	160	IPR001356	Homeobox domain
Pfam	PF00046	3.5E-19	99	154	IPR001356	Homeobox domain
CDD	cd00086	3.15E-16	103	154	No hit	No description
PRINTS	PR00031	5.4E-5	127	136	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	131	154	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.4E-5	136	152	IPR000047	Helix-turn-helix motif
PROSITE profile	PS50848	10.735	259	349	IPR002913	START domain
Pfam	PF01852	2.9E-5	269	346	IPR002913	START domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MGVDMSNNPP TSRTKDFFVS PALSLSLAGI FRDAGAAAAN MEVEEGDEGS GGGGGQREDT 60 AEISSENSGL LRSRSEDDFE GEGEHDDDGD GDKNKKKKRK KYHRHTAEQI REMEALFKES 120 PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKSEME KLREENKAMR 180 EQINKACCPN CGTATTSQDA AVTTDEQQLK IENARLKTEV EKLRATLGKY PPGTASSSSC 240 STGKDQDSRS SLNFLSGIFG LKKSRVMEIV NEAMEELITM ATAGEPLWIR SVETGREILN 300 YDEYVKELSA KNSSNNVRPK RSIEASRETG VVFVDLPRLL QCFTDVVRS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MGVDMSNNPP TSRTKDFFVS PALSLSLAGI FRDAGAAAAN MEVEEGDEGS GGGGGQREDT  60
AEISSENSGL LRSRSEDDFE GEGEHDDDGD GDKNKKKKRK KYHRHTAEQI REMEALFKES  120
PHPDEKQRQQ LSKQLGLAPR QVKFWFQNRR TQIKAIQERH ENSLLKSEME KLREENKAMR  180
EQINKACCPN CGTATTSQDA AVTTDEQQLK IENARLKTEV EKLRATLGKY PPGTASSSSC  240
STGKDQDSRS SLNFLSGIFG LKKSRVMEIV NEAMEELITM ATAGEPLWIR SVETGREILN  300
YDEYVKELSA KNSSNNVRPK RSIEASRETG VVFVDLPRLL QCFTDVVRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	99	KKKKRK
2	94	100	KKKKRKK
3	96	100	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018856994.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2-like
Swissprot	P46607	1e-116	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	A0A2I4HLE9	0.0	A0A2I4HLE9_JUGRE; homeobox-leucine zipper protein GLABRA 2-like
STRING	XP_009338062.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4714	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	1e-112	HD-ZIP family protein

Publications ? help Back to Top
Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]