PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00028862-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HD-ZIP

Protein Properties

Length: 853aa MW: 93471.3 Da PI: 6.4375

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028862-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.3	8.3e-21	139	194	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k WALNUT_00028862-RA 139 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 194 688999***********************************************999 PP
2	START	203.1	1.2e-63	345	569	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela++a++elvk+a+ +ep+Wv+s e++n +e++++f+ + + +ea r++g+v+ ++ lve+l+d++ +W e+++ + WALNUT_00028862-RA 345 ELALAAMDELVKMAQTDEPLWVRSLeggrEMLNHEEYVRTFTHCIGlkpngFVTEATRETGMVIINSLALVETLIDSN-RWAEMFPyliaR 434 5899***********************************88777999999**********************.******** PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghs 162 +t++vissg g lqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+ds ++ + + +v +++lpSg+++++++ng+s WALNUT_00028862-RA 435 SSTTDVISSGmggtrnGSLQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDSIRETSAAPTFVNCRRLPSGCVVQDMPNGYS 525 ************************************************************999******************** PP EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 kvtwveh++++++ +h+++r+l++sg+ +ga++w a lqrqce+ WALNUT_00028862-RA 526 KVTWVEHAEYDESDVHQVYRPLLSSGMGFGAQRWIANLQRQCEC 569 ****************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.11E-20	122	196	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-21	126	196	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.216	136	196	IPR001356	Homeobox domain
SMART	SM00389	1.7E-17	137	200	IPR001356	Homeobox domain
CDD	cd00086	2.17E-18	138	196	No hit	No description
Pfam	PF00046	2.3E-18	139	194	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	171	194	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.647	336	572	IPR002913	START domain
SuperFamily	SSF55961	1.73E-34	338	569	No hit	No description
CDD	cd08875	1.17E-122	340	568	No hit	No description
Pfam	PF01852	1.6E-55	345	569	IPR002913	START domain
SMART	SM00234	7.5E-45	345	569	IPR002913	START domain
SuperFamily	SSF55961	7.14E-20	590	839	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 853 aa Download sequence Send to blast
MSFGGFLENT TGGGGARIVA DIPYSNGNLI HNMPAAALAQ SRLVTPPLTK SMFNSSPGLS 60 LGLVRHRTFS HLDLVAFDYH RFLLSLGSIR ADRARMAENF EVNTGRRSRD EEHESRSGSD 120 NMDGASGDDQ DAADNPPRKK RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSRRLCLETR 180 QVKFWFQNRR TQMKTQLERH ENSLLRQEND KLRAENMSIR DAMRNPICSN CGGPSIMGEI 240 SLEEQHLRIE NSRLKDELDR VCALAGKFLG RPISSLANSI GPPLPSSSLE LGVGSNGYGV 300 LSTVATTLPL GPDFGIGISS ALPVMPPART TAGFDRSIER SMFLELALAA MDELVKMAQT 360 DEPLWVRSLE GGREMLNHEE YVRTFTHCIG LKPNGFVTEA TRETGMVIIN SLALVETLID 420 SNRWAEMFPY LIARSSTTDV ISSGMGGTRN GSLQLMHAEL QVLSPLVPVR EVNFLRFCKQ 480 HAEGVWAVVD VSIDSIRETS AAPTFVNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDESDV 540 HQVYRPLLSS GMGFGAQRWI ANLQRQCECL AILMSSAVPT RDHDAITAGG RRSMLKLAQR 600 MTDNFCAGVC ASTVHKWNKL HADNVDEDVR VMTRKSVDDP GEPPGVVLSA ATSVWLPVSP 660 QRLFDFLRNE RLRSEWDILS NGGPMQEMAH IAKGQDHGNC VSLLRAAVSP SFSLLSSLFR 720 ILSFNVDAMN ANQSSMLILQ ETCIDAAGSL VVYAPVDIPA MHVVMNGGDS AYVALLPSGF 780 AIVPDGPGSR GSGETASNGD GPLRVSGSLL TVAFQILVNS LPTAKLTVES VETVNNLISC 840 TVQKIKAALQ CES

Sequence ? help Back to Top

Protein Sequence Length: 853 aa Download sequence Send to blast

MSFGGFLENT TGGGGARIVA DIPYSNGNLI HNMPAAALAQ SRLVTPPLTK SMFNSSPGLS  60
LGLVRHRTFS HLDLVAFDYH RFLLSLGSIR ADRARMAENF EVNTGRRSRD EEHESRSGSD  120
NMDGASGDDQ DAADNPPRKK RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSRRLCLETR  180
QVKFWFQNRR TQMKTQLERH ENSLLRQEND KLRAENMSIR DAMRNPICSN CGGPSIMGEI  240
SLEEQHLRIE NSRLKDELDR VCALAGKFLG RPISSLANSI GPPLPSSSLE LGVGSNGYGV  300
LSTVATTLPL GPDFGIGISS ALPVMPPART TAGFDRSIER SMFLELALAA MDELVKMAQT  360
DEPLWVRSLE GGREMLNHEE YVRTFTHCIG LKPNGFVTEA TRETGMVIIN SLALVETLID  420
SNRWAEMFPY LIARSSTTDV ISSGMGGTRN GSLQLMHAEL QVLSPLVPVR EVNFLRFCKQ  480
HAEGVWAVVD VSIDSIRETS AAPTFVNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDESDV  540
HQVYRPLLSS GMGFGAQRWI ANLQRQCECL AILMSSAVPT RDHDAITAGG RRSMLKLAQR  600
MTDNFCAGVC ASTVHKWNKL HADNVDEDVR VMTRKSVDDP GEPPGVVLSA ATSVWLPVSP  660
QRLFDFLRNE RLRSEWDILS NGGPMQEMAH IAKGQDHGNC VSLLRAAVSP SFSLLSSLFR  720
ILSFNVDAMN ANQSSMLILQ ETCIDAAGSL VVYAPVDIPA MHVVMNGGDS AYVALLPSGF  780
AIVPDGPGSR GSGETASNGD GPLRVSGSLL TVAFQILVNS LPTAKLTVES VETVNNLISC  840
TVQKIKAALQ CES

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018859074.1	0.0	PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A2I4HSF0	0.0	A0A2I4HSF0_JUGRE; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like
STRING	VIT_15s0048g02000.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]