PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

WALNUT_00028738-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

GRAS

Protein Properties

Length: 750aa MW: 84738 Da PI: 6.6329

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028738-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	379.2	5e-116	377	748	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 l++lL++c +av+++d++ a+++L+++++++sp gd +qRla+ f+ +L+arla+++s++yk l ++t+ +++l+a++l+ ++P+ WALNUT_00028738-RA 377 LRTLLIHCSQAVAADDQRSANEMLKQIRQHSSPFGDGNQRLAHIFADGLEARLAGTGSQIYKGLVNKRTP---AADVLNAYHLYLAACPFR 464 6789**********************************************************999999...9************* PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180 k+s+++ N++I +++ +++H+iDf+i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++eetg+rLa +Ae+++vpfe+++ WALNUT_00028738-RA 465 KISNFISNKTIRNEAVDTTCLHVIDFGILYGFQWPTLIQRLSWRPGGPPKLRITGIDYPQPGfrPAERVEETGRRLATYAESFNVPFEYHA 555 *********************************************************9************************* PP GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271 +ak++e++++eeL+++++E ++Vn+ ++ ++l+desvs++s rd +L+lv++++P+++v+ + n++ F++rf eal +ysalfd+l WALNUT_00028738-RA 556 -IAKKWETIRIEELKINKDEFIVVNCLYRGKNLHDESVSVDSSRDIFLNLVRKINPDIFVHGVVNGAFNAPFFVTRFREALFHYSALFDML 645 .7************************************************************************************* PP GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362 e+ +p+e++er+ +E+e++gre+ nv+aceg er+er et+++W+ r +aGF ++p++ + ++ a +r + + + ++e+s +l++gW WALNUT_00028738-RA 646 ETVVPHEDRERMLLEKEIFGREALNVIACEGWERVERPETYKQWQVRNLRAGFAQLPFDRELVEMAMDKVRSSYHKDFVIDEDSRWLLQGW 736 **********************************************************************888********** PP GRAS 363 kdrpLvsvSaWr 374 k+r+ +++S+W+ WALNUT_00028738-RA 737 KGRTTYALSCWK 748 *********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.202	351	728	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.7E-113	377	748	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence Send to blast
MTMDSRARGF SGSTHGMGLA NQSSSVHSNQ NLISGPRLEN PFLDHKPRGF HYLQPDQAPS 60 YIAPSLDEAQ GEDSPEDCDF SDAVLGFISQ ILMEEGVEDK TCMLQDSLEL QAAEKPFYEL 120 LGKKYPPSPL HRTNDTNGNR ESPDDDRDVY HGNYASSTNS SSCFGDNSLI QNHGEYTSQL 180 QNSYRNSNGM ISSVDGFVDF PSSTLQVPDS NSENHSVWQF RKGFEEASKF LPPRSEFFLN 240 LEANELLLQK PKAVSSKEEV KVEMEEGEYS PTGSRGKKHP HGGEDNNTED ERSSKLAAVY 300 VESTLRSKMF DMVLLCSVGE GKAKLTALQE TLQNGKSKNV QQNGISKTVP RNRQSKGSNG 360 GRRSGKKQRG NKDVVDLRTL LIHCSQAVAA DDQRSANEML KQIRQHSSPF GDGNQRLAHI 420 FADGLEARLA GTGSQIYKGL VNKRTPAADV LNAYHLYLAA CPFRKISNFI SNKTIRNEAV 480 DTTCLHVIDF GILYGFQWPT LIQRLSWRPG GPPKLRITGI DYPQPGFRPA ERVEETGRRL 540 ATYAESFNVP FEYHAIAKKW ETIRIEELKI NKDEFIVVNC LYRGKNLHDE SVSVDSSRDI 600 FLNLVRKINP DIFVHGVVNG AFNAPFFVTR FREALFHYSA LFDMLETVVP HEDRERMLLE 660 KEIFGREALN VIACEGWERV ERPETYKQWQ VRNLRAGFAQ LPFDRELVEM AMDKVRSSYH 720 KDFVIDEDSR WLLQGWKGRT TYALSCWKPA

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence Send to blast

MTMDSRARGF SGSTHGMGLA NQSSSVHSNQ NLISGPRLEN PFLDHKPRGF HYLQPDQAPS  60
YIAPSLDEAQ GEDSPEDCDF SDAVLGFISQ ILMEEGVEDK TCMLQDSLEL QAAEKPFYEL  120
LGKKYPPSPL HRTNDTNGNR ESPDDDRDVY HGNYASSTNS SSCFGDNSLI QNHGEYTSQL  180
QNSYRNSNGM ISSVDGFVDF PSSTLQVPDS NSENHSVWQF RKGFEEASKF LPPRSEFFLN  240
LEANELLLQK PKAVSSKEEV KVEMEEGEYS PTGSRGKKHP HGGEDNNTED ERSSKLAAVY  300
VESTLRSKMF DMVLLCSVGE GKAKLTALQE TLQNGKSKNV QQNGISKTVP RNRQSKGSNG  360
GRRSGKKQRG NKDVVDLRTL LIHCSQAVAA DDQRSANEML KQIRQHSSPF GDGNQRLAHI  420
FADGLEARLA GTGSQIYKGL VNKRTPAADV LNAYHLYLAA CPFRKISNFI SNKTIRNEAV  480
DTTCLHVIDF GILYGFQWPT LIQRLSWRPG GPPKLRITGI DYPQPGFRPA ERVEETGRRL  540
ATYAESFNVP FEYHAIAKKW ETIRIEELKI NKDEFIVVNC LYRGKNLHDE SVSVDSSRDI  600
FLNLVRKINP DIFVHGVVNG AFNAPFFVTR FREALFHYSA LFDMLETVVP HEDRERMLLE  660
KEIFGREALN VIACEGWERV ERPETYKQWQ VRNLRAGFAQ LPFDRELVEM AMDKVRSSYH  720
KDFVIDEDSR WLLQGWKGRT TYALSCWKPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	6e-49	360	749	1	379	Protein SCARECROW
5b3h_D	6e-49	360	749	1	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018807408.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_018807409.1	0.0	PREDICTED: scarecrow-like protein 9
Refseq	XP_018807411.1	0.0	PREDICTED: scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2I4DJS9	0.0	A0A2I4DJS9_JUGRE; scarecrow-like protein 9
STRING	XP_008240788.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein