PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB

Protein Properties

Length: 317aa MW: 35803.1 Da PI: 10.0086

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028370-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.5	6.5e-08	28	72	3	45
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +WT+ E + + +a + + ++ +W ++a++++ g+t +++ + WALNUT_00028370-RA 28 KWTAAENKMFENALAVYDKEspdRWQKVAAMIP-GKTVNDVMRQYK 72 8****************9*********.*****98886 PP
2	Myb_DNA-binding	46.9	6.3e-15	135	179	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky WALNUT_00028370-RA 135 PWTEEEHKLFLMGLKKHGKGDWRNISRNFVITRTPTQVASHAQKY 179 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.1E-4	23	73	IPR009057	Homeodomain-like
PROSITE profile	PS51293	7.863	24	79	IPR017884	SANT domain
SuperFamily	SSF46689	1.35E-10	24	74	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-8	25	77	IPR001005	SANT/Myb domain
CDD	cd00167	1.40E-7	28	74	No hit	No description
Pfam	PF00249	1.6E-6	28	73	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-12	127	180	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.847	128	184	IPR017930	Myb domain
SuperFamily	SSF46689	5.38E-17	129	184	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-16	131	183	IPR006447	Myb domain, plants
SMART	SM00717	3.3E-13	132	182	IPR001005	SANT/Myb domain
CDD	cd00167	3.79E-11	135	180	No hit	No description
Pfam	PF00249	2.5E-13	135	179	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MKWETEIISP ASYIPNANWF LEESKSAKWT AAENKMFENA LAVYDKESPD RWQKVAAMIP 60 GKTVNDVMRQ YKELEVDVGK IEAGLVPVPG YSTSPFTLDW ANSHGYDGFR QSYGIGGKRS 120 SSTRPAEQER KKGVPWTEEE HKLFLMGLKK HGKGDWRNIS RNFVITRTPT QVASHAQKYF 180 IRQQLSGGKD KRRASIHDIT TVNLADIKMP SPEDKAPSSP EHSSVLQHQQ QQQQQQQRNS 240 TVTARTPPFH WNQPNGGGAT MSFSPTQENL FMASPYGIVG SNYGHKMQGQ NLPRGVSHES 300 YTGQAQNMVF QMRYPRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	5e-16	29	94	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018810775.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	Q8S9H7	1e-134	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A2I4DUF3	0.0	A0A2I4DUF3_JUGRE; transcription factor DIVARICATA-like
STRING	EOY33801	1e-160	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF466	34	162

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58900.1	1e-104	Homeodomain-like transcriptional regulator

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]