PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00028098-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 729aa MW: 80096 Da PI: 6.0837 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.6 | 2.8e-20 | 61 | 116 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k WALNUT_00028098-RA 61 RKRYHRHTQSQIQEMEAFFKECPHPDDKQRKELSRHLGLEPLQVKFWFQNKRTQMK 116 789999***********************************************998 PP | |||||||
2 | START | 213.7 | 6.5e-67 | 251 | 470 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela +a++el+++a+ +ep+Wv+ e++n++e+l++f+++ + ++ea+r+s+vv+m++++lve+l+d+k +W+ + +a WALNUT_00028098-RA 251 ELAVAAMEELIRMAQGGEPLWVSCDnsaEILNEEEYLRTFPRGIGpkplgLKSEASRESVVVIMNHMNLVEILMDVK-RWSSVFCgivsRA 340 57899******************99999**************999********************************.*****999999** PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +tl+v+s+g galq+m+ae+q++spl p R+ +fvRy++q+ +g+w++vdvS+d+ ++ + R++++pSg+li++++ng+sk WALNUT_00028098-RA 341 MTLDVLSTGvagnynGALQVMTAEFQVPSPLFPtRENYFVRYCKQHVDGTWAVVDVSLDNLRPGM----ISRSRRRPSGCLIQELPNGYSK 427 ***************************************************************98....69******************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+wvehv++++r +++++r+l++sgla+gak+wvatl+rqce+ WALNUT_00028098-RA 428 VVWVEHVEVDDRAVQSMYRPLLNSGLAFGAKRWVATLDRQCER 470 *****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-22 | 48 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.55E-19 | 48 | 118 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.86 | 58 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-19 | 59 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.10E-18 | 60 | 119 | No hit | No description |
Pfam | PF00046 | 5.8E-18 | 61 | 116 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.593 | 242 | 473 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.51E-33 | 242 | 472 | No hit | No description |
CDD | cd08875 | 9.29E-123 | 246 | 469 | No hit | No description |
SMART | SM00234 | 1.5E-71 | 251 | 470 | IPR002913 | START domain |
Pfam | PF01852 | 2.3E-55 | 252 | 470 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.1E-4 | 346 | 469 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.64E-24 | 491 | 720 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MFQPNIFDAD HHHMLDMAPN SPENEFGKII REDDFEARSG AETTLEAPSG EDQDPNQRSK 60 RKRYHRHTQS QIQEMEAFFK ECPHPDDKQR KELSRHLGLE PLQVKFWFQN KRTQMKAQHE 120 RHENAILKAE NEKLRAENTR FKEALGNASC PNCGGPAALG EMSFDEQHLR IENVRLREEI 180 DRLSGIAAKY VGKPLSSYSQ LSTHVPSRSL DLGAGNFGAQ SGFVGEMYGG SNDLLRSISG 240 PTEADKPLIV ELAVAAMEEL IRMAQGGEPL WVSCDNSAEI LNEEEYLRTF PRGIGPKPLG 300 LKSEASRESV VVIMNHMNLV EILMDVKRWS SVFCGIVSRA MTLDVLSTGV AGNYNGALQV 360 MTAEFQVPSP LFPTRENYFV RYCKQHVDGT WAVVDVSLDN LRPGMISRSR RRPSGCLIQE 420 LPNGYSKVVW VEHVEVDDRA VQSMYRPLLN SGLAFGAKRW VATLDRQCER LASSMASNIP 480 AGDLCVITST EGRKSMLKLA ERMVMSFCTG VGASTAHAWT TLSATGSDDV RVMTRKSMDD 540 PGRPPGIVLS AATSFWIPVP AKRIFDFLRD ENSRREWDIL SNGGLVQEMA HIANGRDPGN 600 CVSLLRVNSA NSSQSNMLIL QESCTDSIGS YVIYAPVDIV AMNVVLSGGD PDYVALLPSG 660 FAILPDGPGL NGGGIHEVGS CGSLLTVAFQ ILVDSVPSAK LSLGSVATVN SLIKCTVEKI 720 KSALMCESS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018820351.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_018820352.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A2I4ELS7 | 0.0 | A0A2I4ELS7_JUGRE; homeobox-leucine zipper protein MERISTEM L1-like | ||||
STRING | EOY28624 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |