PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028018-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 805aa    MW: 88359.4 Da    PI: 6.0271
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028018-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.4e-182683457
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
            Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  WALNUT_00028018-RA 26 YVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIDPKQIKVWFQNRRCREKQ 83
                        5789****************************************************97 PP
2START159.32.9e-501643712204
                         HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EE CS
               START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..ga 90 
                         +aee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+++sg a+ra+g+v  +++   +e+l+d++ W + +++ e+      g  g+
  WALNUT_00028018-RA 164 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISHSCSGVAARACGLVSLEPT-KTAEILKDRLSWFRECRSLEVFTMFPAGngGT 253
                         7899******************************************************.8888888888***********999999999** PP

                         EEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX CS
               START  91 lqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlp 177
                         ++l +++++a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    s++vRae+lpSg+li+p+++g+s +++v+h +l+++++
  WALNUT_00028018-RA 254 IELVYTQTYAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLSGSGAGPNaaaASQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLEAWSV 344
                         ******************************************99999999999************************************** PP

                         HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
               START 178 hwllrslvksglaegaktwvatlqrqc 204
                         +++lr+l++s+ + ++k++ a l++ +
  WALNUT_00028018-RA 345 PEVLRPLYESSKMVAQKMTIAGLRYIR 371
                         *********************998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.1272084IPR001356Homeobox domain
SMARTSM003891.9E-152288IPR001356Homeobox domain
CDDcd000863.43E-162585No hitNo description
SuperFamilySSF466892.48E-162587IPR009057Homeodomain-like
PfamPF000468.5E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.8E-182783IPR009057Homeodomain-like
CDDcd146862.23E-677116No hitNo description
PROSITE profilePS5084825.755154382IPR002913START domain
CDDcd088758.13E-68158374No hitNo description
SuperFamilySSF559615.63E-33163374No hitNo description
SMARTSM002342.9E-41163373IPR002913START domain
Gene3DG3DSA:3.30.530.203.9E-19163362IPR023393START-like domain
PfamPF018529.8E-48164371IPR002913START domain
PfamPF086704.0E-49661804IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MALAVAQQHR ESSSGSIDRH LDAGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP  60
ILSNIDPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLSAM NKLLMEENDR LQKQVSQLVC  120
ENGHMRQQLH TAPAATTDAS CDSAATTPQH SLRDANNPAG LLSIAEETLA EFLSKATGTA  180
VDWVQMPGMK PGPDSVGIFA ISHSCSGVAA RACGLVSLEP TKTAEILKDR LSWFRECRSL  240
EVFTMFPAGN GGTIELVYTQ TYAPTTLAPA RDFWTLRYTT SLENGSLVVC ERSLSGSGAG  300
PNAAAASQFV RAEMLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKMVAQ  360
KMTIAGLRYI RQIAQETSGE VVYGFGRQPA VLRTFSQRLS RGFNDAVNGF NDDGWSLMNC  420
DGAEDNVPPA MLVRFLREHR SEWADFNVDA YSAASLKAGS YTFPGMRPTR FTGSQIIMPL  480
GHTIEHEEVL EIIRLESHCL SQEDAFVSRD IHLLQICNGV DEHAVGACSE LIFATIDEMF  540
PDDAPLLPSG FRIIPLDSKT CDAKDSLPTH RTLDLTSSLE VGPATDHSAG DASSCHSRSV  600
LTIAFQFPFD SSLQDNVANM ARQYVRSVIS SVQRVAMAIS PAGLNPAVGP KLSPGSPEAL  660
TLAHWICQSY SYHLGTELLG SDSLGGDSVL KHLWDHQDAI MCCSLKSLPV FIFANQAGLD  720
MLETTLVALQ DITLDKIFDE SGRKALCADF AKLMQQGFTY LPSGICMSTM GRHVSYEQAV  780
AWKVLAADET TVHCLAFSFV NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808765.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
RefseqXP_018808766.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2I4DNP80.0A0A2I4DNP8_JUGRE; homeobox-leucine zipper protein REVOLUTA-like
STRINGVIT_06s0004g02800.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]