PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00027828-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 166aa MW: 18234.7 Da PI: 10.1868 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.7 | 8e-20 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrd + r +r +lg+f+taeeAa a+++a+ +l+g WALNUT_00027828-RA 30 HFRGVRKRP-WGRFAAEIRDpW-----RkTRKWLGTFDTAEEAALAYDEAAISLRG 79 69*******.**********88.....45************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 9.2E-32 | 30 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-13 | 30 | 79 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-29 | 30 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.812 | 30 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-21 | 30 | 87 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.21E-28 | 30 | 86 | No hit | No description |
PRINTS | PR00367 | 4.7E-10 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-10 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MPVDALHVSG TPTGETQSRF PAPGKRMAVH FRGVRKRPWG RFAAEIRDPW RKTRKWLGTF 60 DTAEEAALAY DEAAISLRGI KARTNFGLHG LVITPPVVTG GSGARELFGW RPSPGYVSGA 120 ANPSASMSEY KGYKMENVDV AVSEQEENSQ TKKPFLFDLN LPAPLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 30 | 89 | 5 | 65 | ATERF1 |
3gcc_A | 3e-20 | 30 | 89 | 5 | 65 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018807115.1 | 1e-120 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
Refseq | XP_018842601.1 | 1e-120 | PREDICTED: ethylene-responsive transcription factor 3-like | ||||
TrEMBL | A0A2I4DIY6 | 1e-118 | A0A2I4DIY6_JUGRE; ethylene-responsive transcription factor 3-like | ||||
STRING | XP_008235314.1 | 6e-56 | (Prunus mume) | ||||
STRING | EMJ00448 | 5e-56 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-22 | ERF domain protein 12 |