PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027715-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 656aa    MW: 73774.3 Da    PI: 4.7455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027715-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.76.7e-064705031755
                         HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         N+ f  Lr+++P+      +  +Ka+iL+ +++Y+k+L+
  WALNUT_00027715-RA 470 NENFLVLRSMVPSI-----TEINKASILKDTIKYLKELE 503
                         8999*********7.....69***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.6E-5415195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508888.924453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0041463508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.64E-6466507No hitNo description
SuperFamilySSF474591.83E-8470518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-8470514IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 656 aa     Download sequence    Send to blast
MANGCQTRDG VPENLRNQLA VAVRSIQWSY AIFWSQSTTE QGVLEWADGY YNGDIKTRKT  60
VQAMELKADK IGLQRSQQLR ELFQSLLEGE TEQAAKRPSA ALSPEDLTDA EWYYLVCMSF  120
VFSPGQGLPG RALANGQTIW LCNAQYADSK VFSRSLLAKS ASIQTVVCFP YLGGVIELGV  180
TELVTEDPSL LQHIKVSLLE LSKPICSDKS SSVPHKADDD RDPMCAKVNQ EVMTTSPLEN  240
LYSPSEEIKF DQEGINDLGG NINEEINMDS PDDCSNGCEH NYQTEDSFML EGLNGGASQV  300
QSWHAMDDDF SNGVQDSMNS SDCISEAFVN QEKPLSTLKR EDNHTHLKEL QNSNHTRLSS  360
LDLGADDDLQ YRRILSSILG RSPRLIEKSC FQYSDCKSSF LSWKKEAIGS AYRPQIQQRI  420
LKNILFSVPL MYGGCSLRSQ KESGGKDWLW KLERDDICMG HVLSGNRREN ENFLVLRSMV  480
PSITEINKAS ILKDTIKYLK ELEARVEELE SCMASVDFEA RARRKYLDIV EQISDNYDRT  540
KIDNGRKPWI NKRKACDMDE TDPELNEAVP EDGLPLDVKV SIKEQEVLIE MRCPYREYIL  600
LDVMDAINNL HLDAYSVQSS SPNGILTLTL KSKFRGAATA PVGMIKQALW KIACKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-162819463227Transcription factor MYC3
4ywc_A5e-162819463227Transcription factor MYC3
4ywc_B5e-162819463227Transcription factor MYC3
5t0f_A3e-162819424188Transcription factor MYC3
5t0q_A3e-162819424188Transcription factor MYC3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807981.10.0PREDICTED: transcription factor EGL1-like
TrEMBLA0A2I4DLE30.0A0A2I4DLE3_JUGRE; transcription factor EGL1-like
STRINGVIT_15s0046g02560.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24443463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-170bHLH family protein