PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026813-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 497aa    MW: 55651.2 Da    PI: 4.5898
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026813-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.63.5e-32361352102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws ++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+Y +     +  + k +++ weF+++ F +g+k+
  WALNUT_00026813-RA  36 FLSKTYDMVDDSATDRIVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYVYAFPYISGFR-KVDPDRWEFANEGFLRGQKH 125
                         9********************999**********************************988777666655.447999************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll+ i r+k 
  WALNUT_00026813-RA 126 LLKGISRRKP 135
                         *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3728127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-3331133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5732133IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-2936133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-153659IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-157486IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-158799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MSGVDNEGEA SGLKGGGGSD HPAPAPMPSA NAPPPFLSKT YDMVDDSATD RIVSWSPTNN  60
SFVVWNPPEF ARDLLPKYFK HNNFSSFVRQ LNTYVYAFPY ISGFRKVDPD RWEFANEGFL  120
RGQKHLLKGI SRRKPAHGHS HQQPQQSNEQ SSSMRACVEV GKFGLEEEVE RLKRDKNVLM  180
QELVKLRQQQ QATDSQLQTM VQRLQGMEQR QQQVMSFLAK AMQSPGFLAQ FVQQQNESNK  240
RITEGNKKRR LKQEDISESE DSPVPDGQIV KYQPITNEAT KAMLRRIMKT DASSRLESFN  300
DKDGFLIADS PSSVNAMDSV SSTSRVSGVT LQEVPPTSSH SVTSDKVATP FPDMSLLVGA  360
QDAPSISVPE ADIIMPELSQ IPEMMPESIM RIPKDNYMGP ETGNGGFIDP TLEVNGSLPI  420
EIDYISPDAD IDLFLSDPNF WDDLVQSPVL EDIESNSVQG MSKENEEQPM ENRWDNVQHM  480
DKLTKQMDLL TSDIKED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-241713310129Heat shock factor protein 1
5d5v_B2e-241713310129Heat shock factor protein 1
5d5v_D2e-241713310129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245252NKKRRLKQ
2246251KKRRLK
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018809115.10.0PREDICTED: heat shock factor protein HSF8-like isoform X1
RefseqXP_018809116.10.0PREDICTED: heat shock factor protein HSF8-like isoform X1
SwissprotQ401521e-166HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A2I4DPP00.0A0A2I4DPP0_JUGRE; heat shock factor protein HSF8-like isoform X1
STRINGEOY251600.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-120heat shock transcription factor A1D
Publications ? help Back to Top
  1. Zhu B, et al.
    Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max).
    J. Plant Res., 2006. 119(3): p. 247-56
    [PMID:16570125]
  2. Cai SY, et al.
    HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants.
    J. Pineal Res., 2017.
    [PMID:28095626]
  3. Zhou J, et al.
    Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1.
    Plant Physiol., 2018. 176(3): p. 2456-2471
    [PMID:29339397]