PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | WALNUT_00026739-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 202aa MW: 23186.6 Da PI: 5.6564 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 104.6 | 5.7e-33 | 46 | 96 | 2 | 52 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvG 52 +++ lkcprCds+ntkfCyynny+ sqPr+fC+aC+r+WtkGG+lrnvPv WALNUT_00026739-RA 46 QSEPLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVA 96 57889********************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-20 | 47 | 96 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.9E-30 | 49 | 97 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.322 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence Send to blast |
MGLSSRQVSG DGLDWSQAFL QDQTTLELPK TPPIMRRQQQ QNQQQQSEPL KCPRCDSSNT 60 KFCYYNNYNK SQPRHFCRAC KRHWTKGGTL RNVPVAPHLP LDQNLNFPFS SSSSFNTNPS 120 PIPTSFQSSD VYYNYTDQEF KTMGEPTITN IMANPSSTAT QPWQIPTTTS GMDMSTYWTW 180 DDIDTFASTD LNLQWDDFEI KP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018807309.1 | 4e-57 | PREDICTED: dof zinc finger protein DOF1.4-like | ||||
TrEMBL | A0A2I4DJI3 | 8e-56 | A0A2I4DJI3_JUGRE; dof zinc finger protein DOF1.4-like | ||||
STRING | XP_008439887.1 | 1e-50 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5107 | 33 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07640.1 | 5e-27 | Dof family protein |