PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025739-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 324aa    MW: 36289.5 Da    PI: 5.0715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025739-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44e-19113162255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  WALNUT_00025739-RA 113 KFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 162
                         89*******.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.0E-30112170IPR001471AP2/ERF domain
PROSITE profilePS5103223.341113170IPR001471AP2/ERF domain
CDDcd000184.26E-32113169No hitNo description
SuperFamilySSF541712.62E-21113170IPR016177DNA-binding domain
SMARTSM003802.8E-36113176IPR001471AP2/ERF domain
PfamPF008472.1E-12113162IPR001471AP2/ERF domain
PRINTSPR003673.4E-10114125IPR001471AP2/ERF domain
PRINTSPR003673.4E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MNRHGAKVIS PVKYTEHRNI TRLLGPLPEE MKRRVIRISV TDGDATDSSS DEEGGEEVFF  60
RRQRVRKFIN EITVESCSTK NDSVLRSVRT AARKKVARVS ASHRALKVPA ARKFRGVRQR  120
PWGKWAAEIR DPLRRVRLWL GTYDTAEEAA MVYDNAAIQL RGPDALTNFV TPPAKCPPEK  180
NPINCSGYNS GEESHNHHVC SPTSVLRCPS PSNEEIESPS LDTTKEIVEV QDARDESCVS  240
ENFSDFSEYS TFDSLIPADI FNFGNSVSDL FEGTSLKESV FEEDFGDMLL SSCENLGLSF  300
SKWPVDEYFQ DIGDIFGSDP VVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19112169159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066RRQRVRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807048.10.0PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2I4DIS90.0A0A2I4DIS9_JUGRE; ethylene-responsive transcription factor CRF2-like
STRINGXP_008239077.11e-127(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.22e-58cytokinin response factor 2