PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025670-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 364aa    MW: 40344.1 Da    PI: 6.3222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025670-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12e-29188248259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqKe+ gs+fprsYYrCt++   +Cp+kk+v+r ++dp+++e+tY+ +H+++
  WALNUT_00025670-RA 188 EDGYTWRKYGQKEILGSRFPRSYYRCTHQklyQCPAKKQVQRLDDDPSTFEVTYRADHTCH 248
                         7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-28183249IPR003657WRKY domain
SuperFamilySSF1182909.29E-26185249IPR003657WRKY domain
SMARTSM007748.9E-38187249IPR003657WRKY domain
PfamPF031061.1E-26188248IPR003657WRKY domain
PROSITE profilePS5081120.977188250IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MEGQIESLIR HGCKVARELE SNLPKLADNP NMLSKSCDEI IKAFGTAKER LYTQDPTAHD  60
PRHMYLLREP QESQQPKIEA SLQGWLRSSY TQTMDDMFQM QLQAERRPPF DMQESGSNAV  120
LAAGLGGGEV EGSARSWSMG GDQLRPLDAS DSGIGSSSQR QRRRKDDGER RTVKMAAPRI  180
GNTEIPPEDG YTWRKYGQKE ILGSRFPRSY YRCTHQKLYQ CPAKKQVQRL DDDPSTFEVT  240
YRADHTCHMS STAPSLIPPL PLTATEITHE MAQTITTQPP QSNSVPLSKW LSMEHFSLRT  300
GAVSSTSGMV VGGGAGPSTS RSGKEVECPV ADMADAMFNS GSSSSNSMDW LLGDKWESED  360
KEGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-19188247968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842975.10.0PREDICTED: WRKY transcription factor 55-like
TrEMBLA0A2I4GGF40.0A0A2I4GGF4_JUGRE; WRKY transcription factor 55-like
STRINGPOPTR_0013s09460.11e-102(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.19e-49WRKY DNA-binding protein 55