PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025297-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YA
Protein Properties Length: 336aa    MW: 37116.4 Da    PI: 8.5616
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025297-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.8e-32162218158
           CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                         +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh hA+rR+RgsgGrF
  WALNUT_00025297-RA 162 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKFRKPYLHESRHLHAMRRARGSGGRF 218
                         69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.3E-37160221IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.283161221IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27163218IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-24164186IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860166186IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-24195218IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MHQKQDGTNH QNTVCFQPWW RGIGHSPISA DFLGETAASL SPSKNSNDSL GSKTRKLQVE  60
DGLDEGNDVN KKIEITLVSQ ADGKCDQEQQ NAASSKPEAM GQYLTPPTEL ELLSHSIACA  120
SYQVSNPYYG GVMPAYGSQA LVHSHCLGGQ PTRMALPLEM AEEPVYVNAK QYHGILRRRQ  180
SRAKAELEKK LIKFRKPYLH ESRHLHAMRR ARGSGGRFLN TKKPSGSDAN TAPEKGAIGA  240
VSSYTFNPLH SEQSNLSGNM HSSYDHMKVT GIHVPETHQQ PTYSNANGNS CYPHHQGFQF  300
SAYHSLSGDR TEVVDCSEKQ HERLMVNGAH RALIIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A5e-20162222262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860580.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_018860581.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_018860582.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A2I4HWP40.0A0A2I4HWP4_JUGRE; nuclear transcription factor Y subunit A-1-like isoform X1
STRINGVIT_08s0007g08250.t011e-117(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.45e-45nuclear factor Y, subunit A1