PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024662-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 602aa    MW: 67216.1 Da    PI: 5.4199
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024662-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix95.45.5e-3054138187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r++m+ ++r+++ k+plWeevs+k++e g++rs+k+Ckek+en+ k++k++keg+ ++  ++ +t+++fdqlea
  WALNUT_00024662-RA  54 RWPRQETLALLKIRSDMDVTFRDASVKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKEGRTGK--PDGKTYRFFDQLEA 138
                         8********************************************************************95..77779*******85 PP
2trihelix108.54.4e-34420505187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k ev+aLi++r++++e+++++  k+plWee+s++mr  g++rs+k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  WALNUT_00024662-RA 420 RWPKVEVQALIKLRTNLDEKYQDSGPKGPLWEEISAAMRNLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 505
                         8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.93447111IPR017877Myb-like domain
SMARTSM007174.7E-451113IPR001005SANT/Myb domain
CDDcd122036.18E-2653118No hitNo description
PfamPF138378.1E-2053139No hitNo description
PROSITE profilePS500907.375413477IPR017877Myb-like domain
SMARTSM007174.7E-5417479IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-4418476IPR009057Homeodomain-like
CDDcd122031.29E-30419484No hitNo description
PfamPF138371.7E-23419506No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010192Biological Processmucilage biosynthetic process
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MLGGDSGSRV LESSDDAAAA MAAAVTAQQG AEVGGVGSNS GEEDKGDRSY GGNRWPRQET  60
LALLKIRSDM DVTFRDASVK GPLWEEVSRK LAELGYHRSA KKCKEKFENV YKYHKRTKEG  120
RTGKPDGKTY RFFDQLEALD NHPNSLQSSS TPAKSYPTAP PAVIPATVAM RPFINPPSLP  180
QITVTSATQS SMNIATPAIN LTIPSFPPTN PTILPTPPIV TNSSQISANI PSSFPNLSAD  240
LISNSTSSSS STSSDEEVLE VRRKRKRKWK DFFQRLMREV IQKQEELHRR FLEAIEKREH  300
ERMVREEAWR VQEMARITRE REILAHERSI AATKDAAVMS FLQKISEQQN PDQAAQFDLP  360
QPQPVLQPAP PPQALIPVQP SAPISAPTAA ATVLPQTVTS LGIQKIDNNG GSFTPRSSSR  420
WPKVEVQALI KLRTNLDEKY QDSGPKGPLW EEISAAMRNL GYNRSAKRCK EKWENINKYF  480
KKVKESNKKR PEDSKTCPYF HQLDALYRQK NKFENPVSSN QVKPENNMVP LMVQPEQQWP  540
PRQDQQPSDT AMEDAESEPM DENQEEDDDD KDGDEEEEEE DEEGSASFEI VASKPASIGA  600
AE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261266RRKRKR
2261267RRKRKRK
3262267RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00243DAPTransfer from AT1G76880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851634.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-145TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A2I4H6600.0A0A2I4H660_JUGRE; trihelix transcription factor GT-2-like
STRINGAES623650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-164Trihelix family protein