PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00023696-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HD-ZIP

Protein Properties

Length: 732aa MW: 80496.6 Da PI: 6.3583

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00023696-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.6	1.2e-19	63	118	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k WALNUT_00023696-RA 63 RKRYHRHTQGQIQEMETFFKECPHPDDRQRKELSRQLGLEPLQVKFWFQNKRTQMK 118 789999***********************************************998 PP
2	START	218.8	1.8e-68	253	472	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ela +a++elv++a+ +ep+Wv+ + e++n++e+l++f+++ + ++ea+r+s+vv+m++ +lve+l+d+k +W++ + +a WALNUT_00023696-RA 253 ELAVAAMEELVRMAQGGEPLWVSCAnstEILNEEEYLRTFPRGIGpkplgLKSEASRESAVVIMNHINLVEILMDVK-RWSTVFCgivsRA 342 57899***********************************999****************************.**99999 PP EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +tl+v+s+g galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ + R++++pSg+li++++ng+sk WALNUT_00023696-RA 343 TTLDVLSTGvagnynGALQVMKAEFQVPSPLVPtRENYFVRYCKQHADGTWAVVDVSLDNLRPSF----ISRSRRRPSGCLIQELPNGYSK 429 ************************************************************976....79**************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 v+w+ehv++++r +h+++r+lv+sg+a+gak+w+atl+rqce+ WALNUT_00023696-RA 430 VIWIEHVEVDDRAVHSIYRPLVNSGIAFGAKRWLATLDRQCER 472 ***************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.85E-19	48	120	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-22	49	118	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	60	120	IPR001356	Homeobox domain
SMART	SM00389	5.3E-18	61	124	IPR001356	Homeobox domain
CDD	cd00086	6.80E-18	62	121	No hit	No description
Pfam	PF00046	2.9E-17	63	118	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
SuperFamily	SSF55961	5.38E-36	244	473	No hit	No description
PROSITE profile	PS50848	45.505	244	475	IPR002913	START domain
CDD	cd08875	7.48E-128	248	471	No hit	No description
SMART	SM00234	1.2E-72	253	472	IPR002913	START domain
Pfam	PF01852	5.0E-57	254	472	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	5.1E-6	348	472	IPR023393	START-like domain
SuperFamily	SSF55961	1.87E-22	493	724	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 732 aa Download sequence Send to blast
MEMFQPNMFD THHLMLDIMT PKSSESELVK IRDQDDFETG SGTEIMEVAP SGEDQDPNQS 60 SKRKRYHRHT QGQIQEMETF FKECPHPDDR QRKELSRQLG LEPLQVKFWF QNKRTQMKAQ 120 HERHENAILK AENEKLRAEN NRFKESLGNT SCPNCGGPAT LGEMSFDEQH LRIENARLRE 180 EIDRISVIAA KYVGKPLTSY SHLSPLVPSR SGLDLGVGNF KAQTGFVGEM YGGNDLLRSV 240 SGPTEADKPM IVELAVAAME ELVRMAQGGE PLWVSCANST EILNEEEYLR TFPRGIGPKP 300 LGLKSEASRE SAVVIMNHIN LVEILMDVKR WSTVFCGIVS RATTLDVLST GVAGNYNGAL 360 QVMKAEFQVP SPLVPTRENY FVRYCKQHAD GTWAVVDVSL DNLRPSFISR SRRRPSGCLI 420 QELPNGYSKV IWIEHVEVDD RAVHSIYRPL VNSGIAFGAK RWLATLDRQC ERLTSSMANN 480 IPAGDLCVIT STEGRKSMLK LAERMVMSFC TGVGASTAHA WTTLSATGSD EVRVMTRKSM 540 DDPGRPPGIV LSAATSFWIP VPTKRVFDFL RYENSRTQWD ILSNGGLVQE MAHIANGRDQ 600 GNCVSLLRVN SANSSQSNML ILQESCTDST GSYVIYAPVD IVAMNVVLSG GDPDYVALLP 660 SGFAILPDGP AGVNGGGILG VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV 720 ERIKAAVMCE NS

Sequence ? help Back to Top

Protein Sequence Length: 732 aa Download sequence Send to blast

MEMFQPNMFD THHLMLDIMT PKSSESELVK IRDQDDFETG SGTEIMEVAP SGEDQDPNQS  60
SKRKRYHRHT QGQIQEMETF FKECPHPDDR QRKELSRQLG LEPLQVKFWF QNKRTQMKAQ  120
HERHENAILK AENEKLRAEN NRFKESLGNT SCPNCGGPAT LGEMSFDEQH LRIENARLRE  180
EIDRISVIAA KYVGKPLTSY SHLSPLVPSR SGLDLGVGNF KAQTGFVGEM YGGNDLLRSV  240
SGPTEADKPM IVELAVAAME ELVRMAQGGE PLWVSCANST EILNEEEYLR TFPRGIGPKP  300
LGLKSEASRE SAVVIMNHIN LVEILMDVKR WSTVFCGIVS RATTLDVLST GVAGNYNGAL  360
QVMKAEFQVP SPLVPTRENY FVRYCKQHAD GTWAVVDVSL DNLRPSFISR SRRRPSGCLI  420
QELPNGYSKV IWIEHVEVDD RAVHSIYRPL VNSGIAFGAK RWLATLDRQC ERLTSSMANN  480
IPAGDLCVIT STEGRKSMLK LAERMVMSFC TGVGASTAHA WTTLSATGSD EVRVMTRKSM  540
DDPGRPPGIV LSAATSFWIP VPTKRVFDFL RYENSRTQWD ILSNGGLVQE MAHIANGRDQ  600
GNCVSLLRVN SANSSQSNML ILQESCTDST GSYVIYAPVD IVAMNVVLSG GDPDYVALLP  660
SGFAILPDGP AGVNGGGILG VGSGGSLLTV AFQILVDSVP TAKLSLGSVA TVNSLIKCTV  720
ERIKAAVMCE NS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018849836.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Refseq	XP_018849837.1	0.0	PREDICTED: homeobox-leucine zipper protein MERISTEM L1-like
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A2I4H0Z8	0.0	A0A2I4H0Z8_JUGRE; homeobox-leucine zipper protein MERISTEM L1-like
STRING	EOY28624	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1508	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]