PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00023493-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 412aa MW: 45691.1 Da PI: 7.5962 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1e-17 | 52 | 101 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+tae+Aa a++ a+++++g WALNUT_00023493-RA 52 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEDAACAYDLAARAMRG 101 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.1E-32 | 52 | 115 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-29 | 52 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.9E-11 | 52 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.234 | 52 | 109 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.20E-29 | 52 | 108 | No hit | No description |
SuperFamily | SSF54171 | 5.56E-21 | 52 | 109 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-9 | 53 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-9 | 75 | 91 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MEDDFRRLNR LTHSLEPISD LHKKCTAMAT AATTTTTTNK RSLRDQPGGT MRYRGVRRRP 60 WGRYAAEIRD PQSKERRWLG TFDTAEDAAC AYDLAARAMR GLKARTNFVY PAPPPPSATD 120 TFLPPFNFPR QSRRPAKIPA NRHQFGAASG WSAFSNHRDG DHFPGSAAQK NSSLNMLLLR 180 DLLSSSSNPS LVSPTQPQGL DHEQLPCINV SSSSASAFSD CSLLNQSSNL NISQTFVSSS 240 MSLPPIDNNL ISYNCSTGVS NRTTAQQIHD FEFIPKESSD SGLLEEIIHG FFPKPSTKKC 300 ESPKTQTCTF DSGPPQISDM SIPQSLDEMK RGEKNEHLGF SFDYQEVPHQ LDNLRGVRRD 360 LFGMTQAAAV PFSYEIPAVN LHQVGGPESM LMDDLFQYQE PLSAFAARVH NA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 52 | 108 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018808292.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ESR2-like | ||||
TrEMBL | A0A2I4DMD6 | 0.0 | A0A2I4DMD6_JUGRE; ethylene-responsive transcription factor ESR2-like | ||||
STRING | EOY00642 | 1e-103 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 3e-14 | DORNROSCHEN-like |