PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

G2-like

Protein Properties

Length: 356aa MW: 39689.7 Da PI: 7.6217

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00022627-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.1	2.5e-30	15	69	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+W peLH+rF eav+qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl WALNUT_00022627-RA 15 KPRLKWIPELHQRFTEAVDQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 69 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	9.6E-29	13	72	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-14	14	70	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.6E-21	15	70	IPR006447	Myb domain, plants
Pfam	PF00249	9.8E-6	17	68	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-22	113	159	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MQNQNMNLVL STDAKPRLKW IPELHQRFTE AVDQLGGADK ATPKSLMRVM GIPGLTLYHL 60 KSHLQKYRLG KSQLPESCTD NKEEDHREIK TNDGHLSRDI SDATKNQINE NLQIAQALQL 120 QMEVQRKLHE QIEVQRHLQL RIEAQGKYLQ SVLKKAQETL SGYNSSPLGV ELAKAELSQL 180 VSMVNTGCPS SSVSELTETG DLSLKDVERK QVRGTICSME SSLTSSESSG RKEEKRPMKD 240 SGDPQMSNTT ALELSLMDLH PEDKPRRTDA SNQGSGRKRS GSAISDGICA EQPVSKRSPT 300 LRDKSGNPLR KSGLLEKLDL NSHYQHDIES GPKAIDLNIK GIELCNGWNL DNTDRF

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MQNQNMNLVL STDAKPRLKW IPELHQRFTE AVDQLGGADK ATPKSLMRVM GIPGLTLYHL  60
KSHLQKYRLG KSQLPESCTD NKEEDHREIK TNDGHLSRDI SDATKNQINE NLQIAQALQL  120
QMEVQRKLHE QIEVQRHLQL RIEAQGKYLQ SVLKKAQETL SGYNSSPLGV ELAKAELSQL  180
VSMVNTGCPS SSVSELTETG DLSLKDVERK QVRGTICSME SSLTSSESSG RKEEKRPMKD  240
SGDPQMSNTT ALELSLMDLH PEDKPRRTDA SNQGSGRKRS GSAISDGICA EQPVSKRSPT  300
LRDKSGNPLR KSGLLEKLDL NSHYQHDIES GPKAIDLNIK GIELCNGWNL DNTDRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-19	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-19	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-19	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-19	15	71	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018807434.1	0.0	PREDICTED: myb family transcription factor PHL8-like
Refseq	XP_018817675.1	0.0	PREDICTED: myb family transcription factor PHL8-like
Swissprot	F4I274	2e-84	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A2I4DJV4	0.0	A0A2I4DJV4_JUGRE; myb family transcription factor PHL8-like
STRING	XP_008339891.1	1e-171	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5218	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	2e-84	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]