PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00022539-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

FAR1

Protein Properties

Length: 175aa MW: 19865.3 Da PI: 4.8895

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00022539-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	99.4	3.8e-31	75	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 +fYn YAk++GFs+++++ ++sk++++i++r+f+Cskeg+r+e++ k ++k+r r+ tr gCka ++v+k+++gkw+v+kle++H WALNUT_00022539-RA 75 NFYNVYAKQTGFSICVNSYYRSKKDNSIISREFCCSKEGFRRERSAKkvvlgdDTKRRCVRPITREGCKALMTVRKRDNGKWYVAKLEKNH 165 6*****************************************99999999999**************************** PP FAR1 86 nHela 90 nHel+ WALNUT_00022539-RA 166 NHELV 170 *97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-28	75	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MEEGISSEDE EGVDSYVALE KGGDECCVVE DVETPMVLDD AKEDNVNFEY CRSLAGGVVE 60 PMLGMEFTTE DDARNFYNVY AKQTGFSICV NSYYRSKKDN SIISREFCCS KEGFRRERSA 120 KKVVLGDDTK RRCVRPITRE GCKALMTVRK RDNGKWYVAK LEKNHNHELV TPAVS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018821355.1	1e-127	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2I4EPM7	1e-126	A0A2I4EPM7_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
STRING	EOY03612	6e-83	(Theobroma cacao)
STRING	XP_002526081.1	1e-83	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19680	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	4e-27	FAR1 family protein