PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00022405-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 293aa    MW: 32520.2 Da    PI: 8.7504
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00022405-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00067227249223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp Cg  Fs+   L+ H  + H
  WALNUT_00022405-RA 227 ECPQCGAKFSSVTALVEHVEKvH 249
                         5*****************99888 PP
2zf-C2H216.62.2e-05265287223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                         +Cp+C++ F+++ +L+ H  + H
  WALNUT_00022405-RA 265 VCPKCSRGFRDPVSLVEHVERdH 287
                         7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183102.09E-12750No hitNo description
Gene3DG3DSA:4.10.1110.101.2E-10953IPR000058Zinc finger, AN1-type
PROSITE profilePS510397.7161056IPR000058Zinc finger, AN1-type
PfamPF014282.6E-131351IPR000058Zinc finger, AN1-type
SMARTSM001542.9E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.8E-1091150IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.88E-893143No hitNo description
PROSITE profilePS510397.75198145IPR000058Zinc finger, AN1-type
PfamPF014283.3E-7101141IPR000058Zinc finger, AN1-type
SMARTSM001540.018101142IPR000058Zinc finger, AN1-type
SMARTSM003550.01226249IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494226254IPR007087Zinc finger, C2H2
PfamPF138945.2E-4227249No hitNo description
PROSITE patternPS000280228249IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-4230249IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.8264287IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.58264291IPR007087Zinc finger, C2H2
PROSITE patternPS000280266287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MGTPEFSDLG KHCTVDHCKQ IDFLPFTCDR CRQVFCLEHR SYIKHSCPKA DRQDVTVVIC  60
PLCAKGVRLI PQEDPNISWE TLVNIECDPS NYEKVTKKKK CPVPACREVL TFSNTIKCRD  120
CLVDHCLKHR FGPDHKCSGP KKSEAGFPFM GLLNRSRTEN SKPNRAPTSS SSKWTSNFLN  180
AASTVRASAE AGMAKLSTEI SQKWQIAKDG IGQSSNSSRV GGIGQEECPQ CGAKFSSVTA  240
LVEHVEKVHE RSGRRGGMKK VSIDVCPKCS RGFRDPVSLV EHVERDHGRT PRA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018838804.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
SwissprotQ8VZ421e-128SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A2I4G4H50.0A0A2I4G4H5_JUGRE; zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like
STRINGXP_010102532.11e-178(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-131C2H2 family protein