PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00021765-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 394aa MW: 45536.6 Da PI: 4.4151

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00021765-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49	1.6e-15	160	244	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrer.gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt++e+ +L++a ++ + +r++l+ W+ev++k++e ++er+ +qC+++++ l+k+ykk+k ++ + t +++s+++yf++++ WALNUT_00021765-RA 160 WTERETFVLLDAWVDRFLHRGRKSLRSEEWQEVAEKVSEIsKIERTDTQCRNRLDTLKKKYKKEKMRMAE-TGDATSKWVYFKKMD 244 ***********************************775278**********************9.688888******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.8E-5	159	228	IPR009057	Homeodomain-like
Pfam	PF13837	1.2E-20	159	246	No hit	No description
PROSITE profile	PS50090	6.272	160	217	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 394 aa Download sequence Send to blast
MDDTEDDARY PPNRYGVNHQ QGYGSSSRQK LSVRNAPYSS SAGNQYVDED DDEDEEDEDE 60 LAEEEDNDDQ SNGFRNIHED LEDDDDEEEE EEEDEDDDKQ KSYGRRIENV DFERHPKKRK 120 LKSLVSSYEF APRVPTPSAA APALPAPKPS VGGRNSLTDW TERETFVLLD AWVDRFLHRG 180 RKSLRSEEWQ EVAEKVSEIS KIERTDTQCR NRLDTLKKKY KKEKMRMAET GDATSKWVYF 240 KKMDMLLSSP PPQAGLSCGL DSGEYVFMNP RVYLNRANGL EEMRDSPGNS ESTDGEEDDS 300 DGLPPKKRRI GRVNDEGPSF RLLADSIHKF SDIYEKIENS KRQQMVELER MRMDFHRELE 360 MQKRQILERA HAEIVKIRQG DDEENDVSAE NASG

Sequence ? help Back to Top

Protein Sequence Length: 394 aa Download sequence Send to blast

MDDTEDDARY PPNRYGVNHQ QGYGSSSRQK LSVRNAPYSS SAGNQYVDED DDEDEEDEDE  60
LAEEEDNDDQ SNGFRNIHED LEDDDDEEEE EEEDEDDDKQ KSYGRRIENV DFERHPKKRK  120
LKSLVSSYEF APRVPTPSAA APALPAPKPS VGGRNSLTDW TERETFVLLD AWVDRFLHRG  180
RKSLRSEEWQ EVAEKVSEIS KIERTDTQCR NRLDTLKKKY KKEKMRMAET GDATSKWVYF  240
KKMDMLLSSP PPQAGLSCGL DSGEYVFMNP RVYLNRANGL EEMRDSPGNS ESTDGEEDDS  300
DGLPPKKRRI GRVNDEGPSF RLLADSIHKF SDIYEKIENS KRQQMVELER MRMDFHRELE  360
MQKRQILERA HAEIVKIRQG DDEENDVSAE NASG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018840819.1	0.0	PREDICTED: trihelix transcription factor ASIL2-like
TrEMBL	A0A2I4GA85	0.0	A0A2I4GA85_JUGRE; trihelix transcription factor ASIL2-like
STRING	EOY26726	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2441	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	4e-70	Trihelix family protein