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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00021676-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 403aa MW: 45035.9 Da PI: 4.5766 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.6 | 3.6e-19 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d ++ r++lg+++taeeAa+a+++a+ l+g WALNUT_00021676-RA 45 RYIGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEEAARAYDEAACLLRG 94 799******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.72E-31 | 44 | 101 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-19 | 45 | 102 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-33 | 45 | 108 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-14 | 45 | 94 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 45 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.809 | 45 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MVRKRKGSEW EEEEENSDRN MGLEQMMEEA AAVAALCGSR RNRKRYIGVR QRPSGRWVAE 60 IKDTIQKIRV WLGTYDTAEE AARAYDEAAC LLRGANTRTN FWPCSSSLHS APALPSKITN 120 LLLLRLKARQ IASASTTTSL PADFQEQETE VKDPHFDNFF NVLEDRTFYE SSGASSITTS 180 ENIAQSFASS FSGLEGDCVR ALDMVDNNKC TNVDGKSHGE GKDQEERDQE KEDFDMALID 240 LQFVDEVGSN CYCSPFEIAE EMVKPMEQEN HGDEPSILGE TMKRLMFERK FSASLYAFNG 300 IPECLMLKQS GLVANGTERS EQLSHHSNLR NNGNNTREDK KVTEENLHME VQEQVGSREK 360 SMEIGSSSSS FSSSSSSSSS SLITETGEPS LWSSLNLPPI CFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018836812.1 | 0.0 | PREDICTED: uncharacterized protein LOC109003219 | ||||
TrEMBL | A0A2I4FYU1 | 0.0 | A0A2I4FYU1_JUGRE; uncharacterized protein LOC109003219 | ||||
STRING | EOY03545 | 1e-112 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-19 | related to AP2 11 |