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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00021503-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 162aa MW: 17437.8 Da PI: 10.5136 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.5 | 4e-19 | 8 | 58 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+ eAa a++ a+++l+g+ WALNUT_00021503-RA 8 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDGAARSLRGA 58 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.878 | 8 | 65 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.80E-28 | 8 | 66 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-21 | 8 | 66 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.9E-34 | 8 | 71 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-12 | 8 | 57 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-31 | 8 | 65 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 9 | 20 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-10 | 31 | 47 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence Send to blast |
MASAREGHYR GVRKRPWGRY AAEIRDPWKK TRVWLGTFDT PVEAALAYDG AARSLRGAKA 60 KTNFPAPVTA GLPLDLNLPS PGHWNSQSGR LALGEFLQPG HVLNDMSGGV QLDSSSPHRR 120 EALVTVAAGV APLPESSATA SFLGLVRRGL PVDLNEPPPL WL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 4 | 71 | 1 | 69 | ATERF1 |
3gcc_A | 1e-21 | 4 | 71 | 1 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018810371.1 | 1e-113 | PREDICTED: ethylene-responsive transcription factor 12-like | ||||
Swissprot | Q94ID6 | 5e-42 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | A0A2I4DTA3 | 1e-112 | A0A2I4DTA3_JUGRE; ethylene-responsive transcription factor 12-like | ||||
STRING | VIT_10s0003g00130.t01 | 1e-69 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 2e-44 | ERF domain protein 12 |