PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020774-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 381aa    MW: 40582.9 Da    PI: 8.9296
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020774-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1391.3e-4381156176
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                         +CqvegC++dls+ak y++rhkvC++hsk+p+v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+
  WALNUT_00020774-RA  81 RCQVEGCKVDLSDAKAYYSRHKVCSMHSKSPKVIVAGIEQRFCQQCSRFHLLPEFDQGKRSCRRRLAGHNERRRKP 156
                         6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.8E-3675143IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.7179156IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.27E-4180160IPR004333Transcription factor, SBP-box
PfamPF031108.1E-3382155IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048653Biological Processanther development
GO:2000025Biological Processregulation of leaf formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MEMGSGSLAE SGGSSSASPP ISSSESLNGL KFGQKIYFED AGTGAPTKQG GGTGSSSSGS  60
TPPKKVRSGG GGVLQGGQTP RCQVEGCKVD LSDAKAYYSR HKVCSMHSKS PKVIVAGIEQ  120
RFCQQCSRFH LLPEFDQGKR SCRRRLAGHN ERRRKPPPGS LLSSRYGRLS SSFFGNNSRG  180
GFLMDFSAYP KFTGRDAWPT TRSEQVSGNQ TTTSTGKFLP HPWQSNTENP TSDLYLQGSV  240
TGMGYPGPGI PPGECFTGVT DSSCALSLLS NQTWGSRSQE SGPIMKDLMN AERAPVAQPT  300
APHGAVVNQF PSCSWGVKGN EVGSSSDEMP PDLGLSQISQ PFNSQFSGEL ESSQQSRRQY  360
VVELGHSGAY SSSPQQLHWS L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-31821551184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00307DAPTransfer from AT2G42200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808546.10.0PREDICTED: squamosa promoter-binding-like protein 9
TrEMBLA0A2I4DN150.0A0A2I4DN15_JUGRE; squamosa promoter-binding-like protein 9
STRINGVIT_08s0007g06270.t011e-173(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.15e-57squamosa promoter binding protein-like 9