PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020663-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 531aa    MW: 57052.8 Da    PI: 6.7604
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020663-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.14.3e-34256312259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +DgynWrKYGqK+vkgsefprsYY+C++++Cpvkkkvers  d++v+ei+Y+g+Hnh+
  WALNUT_00020663-RA 256 EDGYNWRKYGQKQVKGSEFPRSYYKCSHPNCPVKKKVERSL-DGQVTEIIYKGQHNHQ 312
                         8****************************************.***************8 PP
2WRKY536.8e-174394752359
                         EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         sYY+Ct++gC+v+k++er+++dpk+v++tYeg+Hnh+
  WALNUT_00020663-RA 439 SYYKCTTPGCTVRKHIERASTDPKAVITTYEGKHNHD 475
                         8***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.6E-30243314IPR003657WRKY domain
PROSITE profilePS5081123.445250314IPR003657WRKY domain
SuperFamilySSF1182902.48E-26253314IPR003657WRKY domain
SMARTSM007742.7E-38255313IPR003657WRKY domain
PfamPF031064.2E-26256312IPR003657WRKY domain
SMARTSM007744.1E-11435476IPR003657WRKY domain
SuperFamilySSF1182903.01E-13435477IPR003657WRKY domain
PfamPF031063.0E-11439475IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-15439477IPR003657WRKY domain
PROSITE profilePS5081121.689439477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MADNEDPAPP LLPSTSSPPP SSSLPSKSTA LSLPSRPTIS LPPRSTMETI FNGAGGGLAG  60
LGFSPGPMTL VSSFFSDNDE CRSFSQLLAG AMASPAAIPS QLHRQSFPAP DELNSTGRDD  120
DFRFKQNRPP GLAIAQPKFF TVPPGMSPAG LLDSPGLFSP GQGSFGMTHQ QALAQVTAQA  180
AQSHSHLHVQ TDYPSSLSTA PTTSSTQLST FTTNTTAHQQ SPSIPDSGVA VNESSDFSHS  240
EQRSQPSSFA ADKPAEDGYN WRKYGQKQVK GSEFPRSYYK CSHPNCPVKK KVERSLDGQV  300
TEIIYKGQHN HQPPQNNKRA KDTGNPSGNS TIQGNPGLAS QVQSGTLNKL KEGIAPCSMS  360
KKDQESSQAT PEHLSGTSDS EEVGDTETGV DEKDEDEPDP KRRSTELKVS EPASSHRTVT  420
EPRIIVQTTS EVDLLDDGSY YKCTTPGCTV RKHIERASTD PKAVITTYEG KHNHDVPTAK  480
TSSHNTANSI ASQRKPDNVA VEKHALTNKM GLRNNDQQPI ARLRLKEEQI T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-24256477877Probable WRKY transcription factor 4
2lex_A8e-24256477877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836361.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-174WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A2I4FXJ50.0A0A2I4FXJ5_JUGRE; probable WRKY transcription factor 4
STRINGXP_008221558.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-147WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]