PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00020564-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 382aa    MW: 41562.3 Da    PI: 9.8773
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00020564-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.93.6e-1575162186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W++  + +Li+a  e+  +l+rg+lk+++W+ev++ +      ++  ++ +qCk++++ ++k+yk +k    ++  +  s++p+fd+l+
  WALNUT_00020564-RA  75 CWSEGATAVLIDAWGERYLQLSRGNLKQKHWKEVADIVssseDYGKTPKTDIQCKNRIDTVKKKYKVEKSKVASG--GGPSKWPFFDRLD 162
                         7*************************************86655666778888******************99997..67778******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-2673164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEDDEIQSH HSQETGSPAS PRANGRITVT VAAAPPAAAP TSQNTITTVA LPVQRPRSGG  60
GGGGGGGGGG GREDCWSEGA TAVLIDAWGE RYLQLSRGNL KQKHWKEVAD IVSSSEDYGK  120
TPKTDIQCKN RIDTVKKKYK VEKSKVASGG GPSKWPFFDR LDQLIGPTAK IAVSSPPLQQ  180
LKVPLAIPVR IRSASTNHYN NSQFLNKPPK KEEETVVLRS GRGQRMQQFR KRGGLESESE  240
SEPEPEPEPE ADADSLDSFP PPGTSERKRP RRMMIGGEKE GSGGGKSGWG NAVKELTQAI  300
LRFGEAYEQA ESAKLQQVVE MEKQRMKFAK ELELQRMQFF MKTQLEISQL KKHGGRRGAG  360
GGNASHHHSN NNNNNNNSDS SN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353361GGRRGAGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018839924.10.0PREDICTED: trihelix transcription factor ASIL2
SwissprotQ9LJG81e-112ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2I4G7Q10.0A0A2I4G7Q1_JUGRE; trihelix transcription factor ASIL2
STRINGcassava4.1_009403m1e-128(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79193044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.11e-82sequence-specific DNA binding transcription factors