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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
WALNUT_00019934-RA |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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| Family |
TCP |
| Protein Properties |
Length: 366aa MW: 40960.3 Da PI: 10.3973 |
| Description |
TCP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| WALNUT_00019934-RA | genome | JHU | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | TCP | 145.9 | 2.9e-45 | 90 | 241 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa 70
++kkdrhski+T++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ +aike ++ +
WALNUT_00019934-RA 90 PVKKDRHSKIYTSQGLRDRRVRLSIGIARKFFDLQDMLGFDKASQTLDWLLTKSRKAIKEVAQMkqnfsghakrlspcsseydvfsG---- 176
68**************************************************************77665555544433222222211.... PP
TCP 71 seceaesssssasnsssg...................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
+ +++ s+ +k ++ s+ + + lakesrakarararertrekm+++
WALNUT_00019934-RA 177 ------------I----NavtdseklegrvsksksllSSSVSN-DKKTKTLSKGAIHLLAKESRAKARARARERTREKMCTE 241
............1....11112222333444444554333333.33333444444699**********************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 366 aa
Download sequence Send
to blast |
MFSSTSSLNP PPHFPSSSDH HFPPPFANHE LGDIFLNQYH HDPLSGPFLP TNAPFPGNVN 60
FAVSKHPTMN RENDIGEYPP SLSNFLVNKP VKKDRHSKIY TSQGLRDRRV RLSIGIARKF 120
FDLQDMLGFD KASQTLDWLL TKSRKAIKEV AQMKQNFSGH AKRLSPCSSE YDVFSGINAV 180
TDSEKLEGRV SKSKSLLSSS VSNDKKTKTL SKGAIHLLAK ESRAKARARA RERTREKMCT 240
ERLHESKKCP TGPQILQQYL SPQSQRADSE RPSKVVAVEI EELHSHLADQ GLRASLIDQE 300
SVVIRKKLKP SGRLDYHQPN LVISKDLSST NGNSNYFPNL SLTWGINSAV AVRSSFFTVG 360
NMNHSN
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269|PubMed:16236768, ECO:0000269|PubMed:8893002}. |
| UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}. |
| Publications
? help Back to Top |
- Vieira CP,Vieira J,Charlesworth D
Evolution of the cycloidea gene family in Antirrhinum and Misopates.
Mol. Biol. Evol., 1999. 16(11): p. 1474-83
[PMID:10555278] - Gubitz T,Caldwell A,Hudson A
Rapid molecular evolution of CYCLOIDEA-like genes in Antirrhinum and its relatives.
Mol. Biol. Evol., 2003. 20(9): p. 1537-44
[PMID:12832647] - Reeves PA,Olmstead RG
Evolution of the TCP gene family in Asteridae: cladistic and network approaches to understanding regulatory gene family diversification and its impact on morphological evolution.
Mol. Biol. Evol., 2003. 20(12): p. 1997-2009
[PMID:12885953] - Costa MM,Fox S,Hanna AI,Baxter C,Coen E
Evolution of regulatory interactions controlling floral asymmetry.
Development, 2005. 132(22): p. 5093-101
[PMID:16236768] - Luo D,Carpenter R,Vincent C,Copsey L,Coen E
Origin of floral asymmetry in Antirrhinum.
Nature, 1996. 383(6603): p. 794-9
[PMID:8893002]
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