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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019934-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | TCP | ||||||||
Protein Properties | Length: 366aa MW: 40960.3 Da PI: 10.3973 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 145.9 | 2.9e-45 | 90 | 241 | 2 | 133 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssa 70 ++kkdrhski+T++g+RdRRvRls+ +a++fFdLqd+LGfdk+s+t++WLl+++ +aike ++ + WALNUT_00019934-RA 90 PVKKDRHSKIYTSQGLRDRRVRLSIGIARKFFDLQDMLGFDKASQTLDWLLTKSRKAIKEVAQMkqnfsghakrlspcsseydvfsG---- 176 68**************************************************************77665555544433222222211.... PP TCP 71 seceaesssssasnsssg...................kaaksaakskksqksaasalnlakesrakarararertrekmrik 133 + +++ s+ +k ++ s+ + + lakesrakarararertrekm+++ WALNUT_00019934-RA 177 ------------I----NavtdseklegrvsksksllSSSVSN-DKKTKTLSKGAIHLLAKESRAKARARARERTREKMCTE 241 ............1....11112222333444444554333333.33333444444699**********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.2E-43 | 91 | 240 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.1 | 92 | 150 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 12.483 | 220 | 237 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MFSSTSSLNP PPHFPSSSDH HFPPPFANHE LGDIFLNQYH HDPLSGPFLP TNAPFPGNVN 60 FAVSKHPTMN RENDIGEYPP SLSNFLVNKP VKKDRHSKIY TSQGLRDRRV RLSIGIARKF 120 FDLQDMLGFD KASQTLDWLL TKSRKAIKEV AQMKQNFSGH AKRLSPCSSE YDVFSGINAV 180 TDSEKLEGRV SKSKSLLSSS VSNDKKTKTL SKGAIHLLAK ESRAKARARA RERTREKMCT 240 ERLHESKKCP TGPQILQQYL SPQSQRADSE RPSKVVAVEI EELHSHLADQ GLRASLIDQE 300 SVVIRKKLKP SGRLDYHQPN LVISKDLSST NGNSNYFPNL SLTWGINSAV AVRSSFFTVG 360 NMNHSN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers. Binds specifically to the DNA sequence 5'-GGNCCCNC-3', and is able to bind to the RAD promoter sequence in vivo. {ECO:0000269|PubMed:16236768, ECO:0000269|PubMed:8893002}. | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Retards growth rate and reduces organ number in the dorsal region of flowers (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00215 | DAP | Transfer from AT1G67260 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018812094.1 | 0.0 | PREDICTED: transcription factor CYCLOIDEA-like isoform X2 | ||||
Swissprot | O49250 | 5e-35 | CYCLD_ANTMA; Transcription factor CYCLOIDEA | ||||
Swissprot | Q9SBV6 | 3e-35 | CYCLD_ANTLN; Transcription factor CYCLOIDEA (Fragment) | ||||
TrEMBL | A0A2I4DY60 | 0.0 | A0A2I4DY60_JUGRE; transcription factor CYCLOIDEA-like isoform X2 | ||||
STRING | cassava4.1_022722m | 3e-68 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G67260.2 | 9e-33 | TCP family protein |
Publications ? help Back to Top | |||
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