PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019918-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 385aa    MW: 42362.4 Da    PI: 8.3517
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019918-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.55.1e-4096172278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         C v+gC++dls + +yhrrh+vCe hsk+pvv+v+g+eqrfCqqCsrfh+l efDe krsCr+rL++hn rrrk+q+
  WALNUT_00019918-RA  96 CLVDGCKSDLSICGDYHRRHRVCELHSKTPVVIVRGKEQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNMRRRKSQP 172
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.3E-3289157IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.51393170IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-3794175IPR004333Transcription factor, SBP-box
PfamPF031101.5E-2996169IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDWDWKDFAW DSIEFKEKEE SSSLAGLVGC SSIGRQKNRG GGLAVDLKLG RVSDLEERSV  60
DGLKDRGAST TTVRSSPSGP LKRNRVLSGT QNIVSCLVDG CKSDLSICGD YHRRHRVCEL  120
HSKTPVVIVR GKEQRFCQQC SRFHSLGEFD EVKRSCRKRL DGHNMRRRKS QPEPLYLSSE  180
KLLSNYKGPR MLQFSSPHIY ATTLRSSTWP GIASADGQRP LNSFAYIYNE GNKMFSFLQE  240
NGPRVGNQAA PEASLYQQAP PNSNNIASTE SGRGCHNILS DGLTQSIDLG CALYLLSTHQ  300
KQTPVIGLNP LVQSSASHPI QSLGSEQQFH GVGVSQYSRS HAVNDKSAGI VLVPDANEFC  360
NGGSQGALDG LLESEASRAL PFWWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A9e-2788169384squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164169MRRRKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4708605e-36AM470860.1 Vitis vinifera contig VV78X074716.3, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812113.10.0PREDICTED: squamosa promoter-binding-like protein 16
TrEMBLA0A2I4DY920.0A0A2I4DY92_JUGRE; squamosa promoter-binding-like protein 16
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-43SBP family protein