PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019755-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 724aa    MW: 78616.1 Da    PI: 6.254
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019755-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2353.5e-11318374155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  WALNUT_00019755-RA 318 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 374
                         57*******************4444.2455535555.779999**************98 PP
2AP235.72.1e-11406451755
                 AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  WALNUT_00019755-RA 406 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 451
                         899*********988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.40E-19318384No hitNo description
PfamPF008471.2E-8318374IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-14318384IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-12319383IPR001471AP2/ERF domain
SMARTSM003801.1E-22319388IPR001471AP2/ERF domain
PROSITE profilePS5103217.319319382IPR001471AP2/ERF domain
PRINTSPR003674.0E-6320331IPR001471AP2/ERF domain
PROSITE profilePS5103216.858400459IPR001471AP2/ERF domain
CDDcd000181.00E-20406461No hitNo description
SMARTSM003802.4E-26406465IPR001471AP2/ERF domain
PfamPF008471.8E-6406451IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-15407460IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-14407461IPR016177DNA-binding domain
PRINTSPR003674.0E-6441461IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MHELVPHLPL LSGQSILFSP TSPSKRYMAS MNWLGFSLSP QELPSQPADQ DHSQNTEPRL  60
AFNSDDISGT DVSGDCFDLT SDSTAPSLNL PPPFGILEAF NRNNQAQDWN MKGLGMNSST  120
NYKTTTDLSM LMGNPCSSQN LENQNQPKLE NFLGRHSFGH HENAAYNNNG DYMFNNCSLQ  180
LPSEAANGVA SSGAGGCSGS IHNNNSIGLS MIKTWLRNQP APTPAQQDNK NDGAGASSGG  240
NNGSLASAQT LSLSMSTGSQ SSSTLPLLTA STTGGASGGE SSSSDNKLQK TTPGLDSQTG  300
AIEAVPRKSI DTFGQRTSIY RGVTRHRWTG RYEAHLWDNS CRREGQTRKG RQGGYDKEEK  360
AARAYDLAAL KYWGTTTTTN FPISNYEKEL EEMKHMTRQE YVASLRRHHQ HGRWQARIGR  420
VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SSTLPIGGAA  480
KRLKDVEQAE MTVDGQRTDD ENITSRLTDG INGYGSAVHH GWPTLAFQQA QPYSMHYPYG  540
QRVWCKQEQD SEAPNNFQDF HQLQLGNTHN FFQPNVLHNL MGMDSASMEH SSGSNSVIYG  600
SQGGADGNGG VGYGSNGGYA IPMSTIITND SNQSQGNHGT FGDSEVKALG YENVFASADP  660
YQARNLYYLS QHSTASVVKT TTAYDQGSMC NNWVPTAVPT LAPRSSNMAV CHAAAPTFTV  720
WNDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814163.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A2I4E4460.0A0A2I4E446_JUGRE; AP2-like ethylene-responsive transcription factor BBM
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-107AP2 family protein