PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019696-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 208aa    MW: 24253.9 Da    PI: 8.4594
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019696-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind101.57.4e-32351322102
                         HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
        HSF_DNA-bind   2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                         Fl+k+y++le      d+   +++sw+++g+ fvv+ + ef++ vLpkyFkh+nf+SF+RQLn+YgFkk+ ++         iweFkh++F
  WALNUT_00019696-RA  35 FLSKTYDLLEgeddddDRGKLRTVSWNAEGTGFVVWSPAEFSELVLPKYFKHNNFSSFIRQLNTYGFKKTCSK---------IWEFKHEKF 116
                         9*********8777655577789*********************************************98765.........5******** PP

                         XXXXXXXXXXXXXXXX CS
        HSF_DNA-bind  87 kkgkkellekikrkks 102
                         +kg +++l +i rkk 
  WALNUT_00019696-RA 117 QKGCRHMLVEITRKKC 132
                         *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.7E-3426125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-3831130IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-2632130IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.0E-2935130IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MAREVLELEL ELEKGTSKSA TTSSQSPRAR CPPPFLSKTY DLLEGEDDDD DRGKLRTVSW  60
NAEGTGFVVW SPAEFSELVL PKYFKHNNFS SFIRQLNTYG FKKTCSKIWE FKHEKFQKGC  120
RHMLVEITRK KCEPSVFPAY LKASEESTMT AMEESNRLQL LKENEVLKRE NLELQMQIAQ  180
FKALEIKLMD YLAQYMMGNK QNKVRRLC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-1611303129Heat shock factor protein 1
5d5v_B2e-1611303129Heat shock factor protein 1
5d5v_D2e-1611303129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018848321.11e-155PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A2I4GWP21e-154A0A2I4GWP2_JUGRE; heat stress transcription factor B-2a-like
STRINGEMJ133034e-93(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.12e-33heat shock factor 4