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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019640-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26340.2 Da PI: 5.3629 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.4e-19 | 40 | 89 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+t eAa a++aa++kl+g WALNUT_00019640-RA 40 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTSLEAAMAYDAAARKLYG 89 69****999.**********8...3.35************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.45E-20 | 39 | 99 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-30 | 40 | 98 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.77E-21 | 40 | 98 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-14 | 40 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.049 | 40 | 97 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 40 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 41 | 52 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-9 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MLKSDMGLVE RKLLVRKPAQ ASSRKGCMRG KGGPENAMCT YKGVRQRTWG KWVAEIREPN 60 RGARLWLGTF DTSLEAAMAY DAAARKLYGS EAKLNLPDLS TINKSQAHPA TSNTSHISQN 120 SSGTTSTSST CSSNNSAIFR DDDDVTPQVL YQNSSALSFT GENMEPGEKQ AGYKSVNFSE 180 NEADGIDGIW GSANSSFPAF DETIWVEAAM SLDFPFMMGD SGAFSGNLVD GSGRETLHSQ 240 WCM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 41 | 97 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018843837.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2D-like | ||||
TrEMBL | A0A2I4GIW5 | 0.0 | A0A2I4GIW5_JUGRE; dehydration-responsive element-binding protein 2D-like | ||||
STRING | Gorai.009G197800.1 | 7e-77 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2562 | 33 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 2e-50 | ERF family protein |