 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
WALNUT_00019519-RA |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
|
| Family |
Dof |
| Protein Properties |
Length: 504aa MW: 54291.1 Da PI: 6.3223 |
| Description |
Dof family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| WALNUT_00019519-RA | genome | JHU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-Dof | 125.4 | 1.7e-39 | 144 | 204 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++
WALNUT_00019519-RA 144 PDKILPCPRCSSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNAA 204
7899*****************************************************9875 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 504 aa
Download sequence Send
to blast |
MSEAKDPAIK LFGKTIPVPE IPTNGSIDSS GAPAPSSVPV VDDNIDQDRA CSTNSSPEAN 60
TDRDGEERAA EKDVLGEKPS GNKQEGPGSP VSSEELTNPD VTSGISENSK TLPVEKESAT 120
LKPSKSEEER SDSSNSQEKP LKKPDKILPC PRCSSMDTKF CYYNNYNVNQ PRHFCKNCQR 180
YWTAGGTMRN VPVGAGRRKN KNAASHYRHI NVSEALQNAQ TDLPNGVHHP SLRPDGTVLT 240
FGSDTPLCES MASVLNLADK TMRNCKQNGF HRPEELRIPV SYGGGENGDD PSNGASVSTS 300
NSTDEPGKTG SQEQAMRICQ GFPPQIPCFP GAPWPYPWNS TQWSSPIPPP AFCPPGFPMP 360
FYPAAAYWGC TVPGAWSMPW LPQPTSPTPN SGPNSPTLGK HSRDENVLKS SNSGEGEPLK 420
ENNTERCLWI PKTLRIDDPG EAAKSSIWAT LGIKNDKANS ISGGGLFKAF QSKSDKKNNI 480
AEASPVLQAN PAALSRSLNF HESS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KC853233 | 0.0 | KC853233.1 Juglans regia dof zinc finger protein DOF5 mRNA, complete cds. |
