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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00019502-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 413aa MW: 45993.4 Da PI: 4.3218 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 46 | 95 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g WALNUT_00019502-RA 46 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 95 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.73E-31 | 45 | 102 | No hit | No description |
SMART | SM00380 | 1.6E-35 | 46 | 109 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.99E-19 | 46 | 103 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-13 | 46 | 95 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.2E-27 | 46 | 102 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.559 | 46 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-8 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-8 | 69 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MARKRNSSGE TVEDKNSREG TMVWDQMVKE AAATVALGGA VRARKRFVGV RQRPSGRWVA 60 EIKDTIQKIR VWLGTFDTAE EAARAYDEAA CLLRGANTRT NFWPCSSSSS SSPALSSKIT 120 NLLLQRLKTR NSSTCTASSA TSSLPIGQQE KKQAEAYRDE ATDFSDTSFT DYLNDPEDYT 180 NFNNINVPST SATAASPDYM NPSFESSFTE KQDCRERETD FDYNWNPNVA QTSSGDGSFG 240 GEGEEDGEEA GTDVGIIDFR FVDDSIGNCF YSPFEIAEEI EEPVLEPENY TDEPSMLRAA 300 MKRMKYERKF SASLYAFNGI SECLKLKNRS RNLNGRGISD QLSNLQKACN NNKVEKSAEE 360 EEEEEYVEMM GKREEETPQS SVEMGTSSAS SLSNEGEWSL WSSLDLPPIC FVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-12 | 46 | 102 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018813977.1 | 0.0 | PREDICTED: dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | A0A2I4E3K9 | 0.0 | A0A2I4E3K9_JUGRE; dehydration-responsive element-binding protein 2A-like | ||||
STRING | cassava4.1_008867m | 1e-165 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3338 | 32 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-21 | related to AP2 11 |