PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00019500-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 516aa    MW: 56587.2 Da    PI: 7.8505
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00019500-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.14.3e-34203259259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         dDgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkvers  d++v+ei+Y+g+Hnhe
  WALNUT_00019500-RA 203 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERSP-DGQVTEIIYKGQHNHE 259
                         8****************************************.***************7 PP
2WRKY99.32.3e-31405464159
                         ---SS-EEEEEEE--TT-SS-E.EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefpr.sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         ldDgy+WrKYGqK+vkg+++pr sYY+Ct +gC+v+k+ver+++dpk+v++tYeg+Hnh+
  WALNUT_00019500-RA 405 LDDGYRWRKYGQKVVKGNPHPRwSYYKCTNPGCNVRKHVERASTDPKAVITTYEGKHNHD 464
                         59********************99***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.375197261IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.6E-30198261IPR003657WRKY domain
SuperFamilySSF1182901.06E-26201261IPR003657WRKY domain
SMARTSM007744.6E-38202260IPR003657WRKY domain
PfamPF031065.1E-26203259IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.3E-35390466IPR003657WRKY domain
SuperFamilySSF1182903.01E-27397466IPR003657WRKY domain
PROSITE profilePS5081135.829400466IPR003657WRKY domain
SMARTSM007741.9E-37405465IPR003657WRKY domain
PfamPF031061.0E-23406464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
METFFTGGSG ASPGPMTLVS SFFSDNYPDS GCRSFSQLLA GAMASPLARP SFYTENSTGN  60
STKEPGPDSV SGFKQSRPMN LVVSRSPLFT IPPGLTPSGL LNSPGFFSPL SPFGMSHQQA  120
LAQVTAQAAL AQSQMLSEYQ PSSVADPTES LTHNPSFTLS EASQMQMAPS TSDPRSSMME  180
SSEASHSDMK YQPASIAIDK PADDGYNWRK YGQKQVKGSE YPRSYYKCTH LNCPVKKKVE  240
RSPDGQVTEI IYKGQHNHEL PQPNRRAKEG SDLNVNIQAK SDLCPQSRAG NQNKSSETVS  300
AYSVPQVDQE STGAGALKLP GSSDSEEEGD VEARGEGDLD EPNPKRRHVP SLSLYLIIIL  360
PFFLGEINSL VCRITDTGTS EVTLRHKTVT EPKIIVQTRS EVDLLDDGYR WRKYGQKVVK  420
GNPHPRWSYY KCTNPGCNVR KHVERASTDP KAVITTYEGK HNHDIPAARN SSHNTADRIA  480
PQKVVAEKQS LLKETGFGNN DKRPVLLQLK EEQIRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-40203467878Probable WRKY transcription factor 4
2lex_A7e-40203467878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC7955510.0KC795551.1 Juglans regia WRKY mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813985.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-139WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2I4E3K40.0A0A2I4E3K4_JUGRE; probable WRKY transcription factor 3
STRINGXP_008230819.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-123WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]