PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018681-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 630aa    MW: 69346.2 Da    PI: 7.9222
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018681-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23134235199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+lt+sd+++ g +++p+ +ae++        +++ +  t+  +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF  
  WALNUT_00018681-RA 134 FAKTLTQSDANNGGGFSVPRYCAETIfprldynAEPPVQ--TILAKDVHGGVWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL- 221
                         89****************************985444444..8999*********************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          + +++ l+v+v+r+
  WALNUT_00018681-RA 222 -RAENGDLCVGVRRA 235
                         .4488889****996 PP
2Auxin_resp115.64.3e-38295378183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+Prast+eF vk++ v++a+++++s+GmRfkm fetedss++++ +Gt+++v+ +dpvrWp+S+Wr+L+
  WALNUT_00018681-RA 295 AANLAANRQPFEVVYYPRASTPEFFVKASAVRAAMQIQWSAGMRFKMPFETEDSSRISWfMGTISSVQVADPVRWPDSPWRLLQ 378
                         7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-29125237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-36128238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.06E-21133234No hitNo description
PROSITE profilePS5086313.028134236IPR003340B3 DNA binding domain
SMARTSM010191.9E-22134236IPR003340B3 DNA binding domain
PfamPF023623.0E-21134235IPR003340B3 DNA binding domain
PfamPF065074.4E-33295378IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MVEYKKASIL TIITVMDSAK ELPVRNSDKC LDSQLWHACA GGMVQMPPIN SKVFYFPQGH  60
AEHALGGATD VANSWIPSLI LCRVSAIKYM ADPETDEVFS KIKLTPLRDN EWGFEDDGFV  120
GNSGIEEQEK PVSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYNAEPP VQTILAKDVH  180
GGVWKFRHIY RGTPRRHLLT TGWSNFVNQK KLVAGDSIVF LRAENGDLCV GVRRAKRGIG  240
GGSQYLSGWN QEVSNCGSPF GGYSGFLREG ENKSMRRSCG AELRGRVRDE SVVEAANLAA  300
NRQPFEVVYY PRASTPEFFV KASAVRAAMQ IQWSAGMRFK MPFETEDSSR ISWFMGTISS  360
VQVADPVRWP DSPWRLLQVT WDEPDLLQNV KRVSPWLVEV VSNLPVIHLP PFSPPRKKLR  420
LPQHPDYSLL GQFAMPSFPS NGLNRSSSLS RISDGIPAGI QGARHAQFGL SAGDFHNKMQ  480
SNLFPIGFQQ LDRAAPPSRV PHTNMVASAE TNDLSCLLTM GNSTQNLKEN KQVKTPHIVL  540
FGQLILTEQQ TSKSCSGDTT GNGSSAGSPE KTGNFSDGSV SHQNGSLENS SDGGSPWYRG  600
HHTNDVALDT GHCKAFMESE DGVRPLICRF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-803140051389Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018853662.10.0PREDICTED: auxin response factor 18-like
RefseqXP_018853663.10.0PREDICTED: auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2I4HC220.0A0A2I4HC22_JUGRE; Auxin response factor
STRINGXP_006485698.10.0(Citrus sinensis)
STRINGEOY186620.0(Theobroma cacao)
STRINGcassava4.1_002980m0.0(Manihot esculenta)
STRINGXP_006436433.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]