PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

WALNUT_00018502-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

SBP

Protein Properties

Length: 1033aa MW: 114949 Da PI: 7.7239

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00018502-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126	1.5e-39	148	225	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvCe+hska+++lv +++qrfCqqCsrfh l++fD+++rsCrrrL++hn+rrrk+++ WALNUT_00018502-RA 148 VCQVEDCKADLSNAKDYHRRHKVCEMHSKASKALVGKVMQRFCQQCSRFHVLQQFDDGRRSCRRRLDGHNRRRRKTHP 225 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-31	145	210	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.411	146	223	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.05E-37	147	229	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-28	149	222	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	4.2E-7	772	933	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.44E-7	799	915	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.75E-7	804	914	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence Send to blast
MEAKCRGKAH ELYGPAVPDL KGVGKKSLEW DLNDWKWDGD LFRATPLNSQ RSDCQSRQLF 60 PVEPEIPENA GLSNSSSFGS DEINLLDYGG KRELEKRRRA VAVEDEELNG ETGSLNLKLG 120 GKVYPIMEGE LKSGKKTKVV GTMANLAVCQ VEDCKADLSN AKDYHRRHKV CEMHSKASKA 180 LVGKVMQRFC QQCSRFHVLQ QFDDGRRSCR RRLDGHNRRR RKTHPDTLVN GGSLNAERGS 240 SYILISLLRI LSNIHSNSSD QTKDQDLLSH LLRNLANTVD GRNISALLEG SQGLLNAGTS 300 TGASQKAPDV IPNGSEHSRP YSSASKMDDC VNVQDHCIPV GQSMTAFASV MAQKRICSDD 360 AEGGHLKALS GAQGTNLPPS RDGLPSKSII SETKVGEVKL NKIDLNNVCD DSEDYIEQVG 420 RSCAPENSGT GLIGLPLWLQ KNPHKSTSPQ PSGNLDSTSS QSPSSSSGEV QGRTDRIVFK 480 LFGKDPNDLP LVLRTQILDW LSHSPTDIES YIRPGCIILT TYVRLEKSMW EEFCRDLGSY 540 LRRLLDSSNN SFWRTGWVYI RVQHCVAFMY NGQIVLDTPL PFKSNKNCRI SSIKPIAVSL 600 SESVQFTVKG FNLSRPTARL LCAQEGKYLV QETCYDLMDG ADAAIRHDEL QCLSFPCSIP 660 NVIGRGFIEV EDHGLSSSFF PFIVVEKEVC SEICMLEHTI DVAETVDDIQ RMPELLEAKT 720 QALDFIHEIG WLLHRSHAKF RLGDMDPNQN LFPFKRFKWL MAFSMDHDWC AVVKKLLDIL 780 LEGVVDTGDH PSIELALLDL GLLHRAVRRN CRPMVDLLLR FCPDKVSDER GAREKQRVDN 840 AYSGFLFKPD TVGPAGLTPL HVAASRSGSE NVLDALTDDP GLVGIEAWKS ARDSTGLTPN 900 DYACLRGHYS YIHLVQKKLS KKSESRHVAL DIAGAVLDFN NKRKQSDGHK LSKVASLQIE 960 KIEIGATYRH CKICEQKLSY GSVRRSLVYQ PAMLSMVAIA AVCVCVALLF KSSPEVVYVF 1020 QPFRWERLKY GSS

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence Send to blast

MEAKCRGKAH ELYGPAVPDL KGVGKKSLEW DLNDWKWDGD LFRATPLNSQ RSDCQSRQLF  60
PVEPEIPENA GLSNSSSFGS DEINLLDYGG KRELEKRRRA VAVEDEELNG ETGSLNLKLG  120
GKVYPIMEGE LKSGKKTKVV GTMANLAVCQ VEDCKADLSN AKDYHRRHKV CEMHSKASKA  180
LVGKVMQRFC QQCSRFHVLQ QFDDGRRSCR RRLDGHNRRR RKTHPDTLVN GGSLNAERGS  240
SYILISLLRI LSNIHSNSSD QTKDQDLLSH LLRNLANTVD GRNISALLEG SQGLLNAGTS  300
TGASQKAPDV IPNGSEHSRP YSSASKMDDC VNVQDHCIPV GQSMTAFASV MAQKRICSDD  360
AEGGHLKALS GAQGTNLPPS RDGLPSKSII SETKVGEVKL NKIDLNNVCD DSEDYIEQVG  420
RSCAPENSGT GLIGLPLWLQ KNPHKSTSPQ PSGNLDSTSS QSPSSSSGEV QGRTDRIVFK  480
LFGKDPNDLP LVLRTQILDW LSHSPTDIES YIRPGCIILT TYVRLEKSMW EEFCRDLGSY  540
LRRLLDSSNN SFWRTGWVYI RVQHCVAFMY NGQIVLDTPL PFKSNKNCRI SSIKPIAVSL  600
SESVQFTVKG FNLSRPTARL LCAQEGKYLV QETCYDLMDG ADAAIRHDEL QCLSFPCSIP  660
NVIGRGFIEV EDHGLSSSFF PFIVVEKEVC SEICMLEHTI DVAETVDDIQ RMPELLEAKT  720
QALDFIHEIG WLLHRSHAKF RLGDMDPNQN LFPFKRFKWL MAFSMDHDWC AVVKKLLDIL  780
LEGVVDTGDH PSIELALLDL GLLHRAVRRN CRPMVDLLLR FCPDKVSDER GAREKQRVDN  840
AYSGFLFKPD TVGPAGLTPL HVAASRSGSE NVLDALTDDP GLVGIEAWKS ARDSTGLTPN  900
DYACLRGHYS YIHLVQKKLS KKSESRHVAL DIAGAVLDFN NKRKQSDGHK LSKVASLQIE  960
KIEIGATYRH CKICEQKLSY GSVRRSLVYQ PAMLSMVAIA AVCVCVALLF KSSPEVVYVF  1020
QPFRWERLKY GSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-28	144	222	6	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018850514.1	0.0	PREDICTED: squamosa promoter-binding-like protein 1
TrEMBL	A0A2I4H314	0.0	A0A2I4H314_JUGRE; squamosa promoter-binding-like protein 1
STRING	XP_008223488.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	squamosa promoter-binding protein-like 12