PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00018272-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 276aa    MW: 31410.1 Da    PI: 5.2694
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00018272-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-3068126259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  WALNUT_00018272-RA  68 SDFWSWRKYGQKPIKGSPYPRGYYRCSTTkGCSAKKQVERCRTDASMLIITYTSSHNHP 126
                         699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-3259128IPR003657WRKY domain
SuperFamilySSF1182904.32E-2664128IPR003657WRKY domain
SMARTSM007745.8E-3667127IPR003657WRKY domain
PROSITE profilePS5081130.87168128IPR003657WRKY domain
PfamPF031064.1E-2569126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEIKRKQRAV MDGSLSLNPD KEISKELKPE TQETSKRSCR KLVVQKNVVT VKIGANHVGK  60
LKNEGPPSDF WSWRKYGQKP IKGSPYPRGY YRCSTTKGCS AKKQVERCRT DASMLIITYT  120
SSHNHPGPNI SDTNLIQPPK EPQNISTTED DLPEPPKQEQ QEEEKLNEPT MTTREKADPG  180
ENHFQYIQYS PISSSQDIIA NQGEDPFTVH LEKSHETMGL LLDEEPLCYS QLMTFSTAIS  240
EENDFFDELE ELPTYSSFIS FMRSNFSEES IHAVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-22681281779Disease resistance protein RRS1
5w3x_D4e-22681281779Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276292e-74KT827629.1 Manihot esculenta WRKY transcription factor 54 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842328.10.0PREDICTED: probable WRKY transcription factor 65 isoform X1
TrEMBLA0A2I4GEK20.0A0A2I4GEK2_JUGRE; probable WRKY transcription factor 65 isoform X1
STRINGEMJ025641e-105(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97083241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.14e-37WRKY DNA-binding protein 65