PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017811-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 370aa    MW: 40793.2 Da    PI: 7.4477
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017811-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.82.4e-31501822126
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec.eaesssssas 83 
                          g+kdrhsk++T +g+RdRRvRls+++a++++dLq++LG+ ++sk i+WLl++ak +i+el+ +        +   ++    + ++++ as
  WALNUT_00017811-RA  50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQERLGLNQPSKVIDWLLNAAKDEIDELPPLrippgnigP---NHPQmLTCHNEVGAS 137
                         689*************************************************************666653321...222233344444444 PP

                 TCP  84 nsssg....kaaksaa..kskksqksaasalnlakesrakarararert 126
                         +s +g    +        +  +s+ ++ ++++l++ s a++ + are  
  WALNUT_00017811-RA 138 HSDEGfkmnS----GIqwEAGSSRLPKPNFWSLDALSGAQSEESARETI 182
                         4444432221....22133444444444457777777777777777743 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136931.32252110IPR017887Transcription factor TCP subgroup
PfamPF036344.8E-2852160IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MITSPKEADF PQKQEGSSSD HDKITKASSS STVPWLRLKD PRIVRVSRAF GGKDRHSKVC  60
TVRGLRDRRV RLSVPTAIQL YDLQERLGLN QPSKVIDWLL NAAKDEIDEL PPLRIPPGNI  120
GPNHPQMLTC HNEVGASHSD EGFKMNSGIQ WEAGSSRLPK PNFWSLDALS GAQSEESARE  180
TIDPKENWTK GNEEDKLGGN EGHAAQFPSN NFLPRVINSS SLPAGFLNSS MPYNYHNWDP  240
SSFPPSNSGS HGYTYRTEDT HNISSVMALP SSSSLPTGSQ ILVCPPGTTQ PFFPSHSMAS  300
GEIGPRQVNH FQMSSSNSHN LLQNSFTPPV FPISQSTRPF YFSMSTRKPL HSPNNSGSQA  360
NEDQDQFPSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1857111155Putative transcription factor PCF6
5zkt_B4e-1857111155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814629.10.0PREDICTED: transcription factor TCP13-like
RefseqXP_018814630.10.0PREDICTED: transcription factor TCP13-like
TrEMBLA0A2I4E5G00.0A0A2I4E5G0_JUGRE; transcription factor TCP13-like
STRINGEOY036991e-142(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.17e-51plastid transcription factor 1