PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017615-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 363aa    MW: 40650.8 Da    PI: 8.1705
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017615-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24e-36251172103
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+
  WALNUT_00017615-RA  25 FLTKTYQLVDDPNTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKH 106
                         9*****************************************************************99.........************** PP

                         XXXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkkse 103
                         ll++i+r+k++
  WALNUT_00017615-RA 107 LLCEIHRRKTA 117
                         ********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.07E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000567.7E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000567.7E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPNTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPQ  120
VALNQHHHHQ HHPHSPLGVN VPSFFPFQGR VSISSSDSDE QANWCDSPPL SSPRGGSTAG  180
VSFVGANYNS TVTALSEDNE RLRRSNSMLM SELAHMRKLY NDIIYFVQNH VKPVAPSNSY  240
PSSLHLCNPP AATATPITTN SPMVQKPLNQ ILGYYPTNPK QAPYSTHAIN SPSSTTSKSS  300
VTILEEPNSN SCKTKLFGVP LQSKKRLHPE YGANPTNMET SIKARLVLEK DDLGLNLMPP  360
SAC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A6e-222011716123Heat shock factor protein 1
5d5u_B6e-222011625131Heat shock factor protein 1
5d5v_B6e-222011625131Heat shock factor protein 1
5d5v_D6e-222011625131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822295.10.0PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-114HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2I4ESB80.0A0A2I4ESB8_JUGRE; heat stress transcription factor B-4-like
STRINGPOPTR_0002s12640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-109heat shock transcription factor B4