PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00017604-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 152aa    MW: 17320.3 Da    PI: 9.7058
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00017604-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.9e-182877255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         y+G+r +k +g+WvAeIr+p   +kr r++lg++ t+  Aa+a++ a  +l+g
  WALNUT_00017604-RA 28 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYITPIAAARAYDTAVFYLRG 77
                        69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-342891IPR001471AP2/ERF domain
PROSITE profilePS5103221.8522885IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-202886IPR016177DNA-binding domain
CDDcd000182.83E-262987No hitNo description
PRINTSPR003676.7E-122940IPR001471AP2/ERF domain
PfamPF008471.4E-102977IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-302986IPR001471AP2/ERF domain
PRINTSPR003676.7E-126787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MEGTCFSTST SAEKRKQRQR QQQHQEKPYR GIRMRKWGKW VAEIREPNKR SRIWLGSYIT  60
PIAAARAYDT AVFYLRGPSA RLNFPDLIFQ EDRHVNDLGD ISAASIRKKA TEVGARVDAI  120
EAAHHPSQPK SGRVSEPPDL NEYPGPENSD ED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-152785463ATERF1
3gcc_A8e-152785463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018822294.11e-111PREDICTED: ethylene-responsive transcription factor RAP2-1-like
SwissprotQ8LC301e-52RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
TrEMBLA0A2I4ESD01e-109A0A2I4ESD0_JUGRE; ethylene-responsive transcription factor RAP2-1-like
STRINGXP_008452588.13e-73(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF129032106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.15e-53related to AP2 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]