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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00017604-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 152aa MW: 17320.3 Da PI: 9.7058 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.3 | 3.9e-18 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g WALNUT_00017604-RA 28 PYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYITPIAAARAYDTAVFYLRG 77 69*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 3.0E-34 | 28 | 91 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.852 | 28 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-20 | 28 | 86 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.83E-26 | 29 | 87 | No hit | No description |
PRINTS | PR00367 | 6.7E-12 | 29 | 40 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-10 | 29 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.6E-30 | 29 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-12 | 67 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MEGTCFSTST SAEKRKQRQR QQQHQEKPYR GIRMRKWGKW VAEIREPNKR SRIWLGSYIT 60 PIAAARAYDT AVFYLRGPSA RLNFPDLIFQ EDRHVNDLGD ISAASIRKKA TEVGARVDAI 120 EAAHHPSQPK SGRVSEPPDL NEYPGPENSD ED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-15 | 27 | 85 | 4 | 63 | ATERF1 |
3gcc_A | 8e-15 | 27 | 85 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018822294.1 | 1e-111 | PREDICTED: ethylene-responsive transcription factor RAP2-1-like | ||||
Swissprot | Q8LC30 | 1e-52 | RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1 | ||||
TrEMBL | A0A2I4ESD0 | 1e-109 | A0A2I4ESD0_JUGRE; ethylene-responsive transcription factor RAP2-1-like | ||||
STRING | XP_008452588.1 | 3e-73 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46768.1 | 5e-53 | related to AP2 1 |
Publications ? help Back to Top | |||
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